Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq715 136 5e-27
seq318 125 9e-24
seq2451 116 5e-21
seq1699 86.0 8e-12
seq251 86.0 8e-12
>seq715
Length=381403
Score = 136 bits (150), Expect = 5e-27
Identities = 188/261 (72%), Gaps = 4/261 (2%)
Strand=Plus/Plus
Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086
||| || || || || || ||||| | || |||||||| || || ||||| | |||
Sbjct 115262 GTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAACCCAGGCATCA-ACC 115320
Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146
|||||| |||||||| || ||||| || || ||||||||||| ||||||||||| ||
Sbjct 115321 CCGCTTTTTCAACCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAAATCCCCTCCACGCA 115380
Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206
|||||||| | ||| ||||| || || || ||| | || | ||| |||| |||
Sbjct 115381 AGCGAACGCGAGGAGCCGCTCCGCGAACGACTTGGA---TCCGTCGATCCATTTCAGCGC 115437
Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 130266
||||| ||||| |||| || ||||| || || | ||| || | ||||||| |||||
Sbjct 115438 CCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGGCGTGGAAGAGTTTGTTCTT 115497
Query 130267 TTCTGATGGATCTTTGATGTA 130287
|| | ||| |||| |||
Sbjct 115498 CTCATTGGAATCCTTGACGTA 115518
>seq318
Length=266665
Score = 125 bits (138), Expect = 9e-24
Identities = 175/244 (72%), Gaps = 5/244 (2%)
Strand=Plus/Plus
Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086
||| ||||||||||| || ||||| | ||| ||||||||| ||| || ||||| || ||
Sbjct 55894 GTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGTCAGTCCCGGCATTAGCCC 55953
Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146
|||||||||| |||||| ||||| || || || |||||||| |||||||| || ||
Sbjct 55954 GCGCTTCTTCAGCCAGAATATCGCGCAGAAACTCCCGGAGAAGAAAATCCCCTCGACGCA 56013
Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAG-GAGCGGGACTTTGTATCAAACCACTTCATCG 130205
|||||||| | || ||||| || ||| ||| || | | |||||| | |
Sbjct 56014 AGCGAACGCGATCAGCCGCTCGGCGAAGCTCTCGGCAC----CGCCGATCCACTTGAGAG 56069
Query 130206 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT 130265
|||| | |||||| |||| | || || || | | ||| || | ||||||| ||||
Sbjct 56070 CCCAATCCGCCTTCTTCTTCACGCAGGGCACCATGTCGATGGCATGGAAGAGTTTGTTCT 56129
Query 130266 TTTC 130269
| ||
Sbjct 56130 TCTC 56133
>seq2451
Length=68748
Score = 116 bits (128), Expect = 5e-21
Identities = 173/244 (71%), Gaps = 5/244 (2%)
Strand=Plus/Minus
Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086
||| ||||||||||| || ||||| | ||||||||||||| || || ||||| || ||
Sbjct 68149 GTGTAGACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGTGAGTCCCGGCATTAGCCC 68090
Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146
|||||||||| |||||| ||||| | || || |||||||| ||||||| || ||
Sbjct 68089 GCGCTTCTTCAGCCAGAATATCGCGTAGAAACTCCCGGAGAAGAAAATCCCCTTGACGCA 68030
Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAG-GAGCGGGACTTTGTATCAAACCACTTCATCG 130205
||||||| | || ||||| || ||| ||| || || | |||||| | |
Sbjct 68029 AACGAACGCTATCAGCCGCTCGGCGAAGCTCTCGGCAC----CGTCGATCCACTTGAGAG 67974
Query 130206 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT 130265
|||| | |||||| |||| | || || || || | ||| || | |||||| ||||
Sbjct 67973 CCCAATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCGATGGCATGGGAGAGTTTGTTCT 67914
Query 130266 TTTC 130269
| ||
Sbjct 67913 TCTC 67910
>seq1699
Length=96573
Score = 86.0 bits (94), Expect = 8e-12
Identities = 93/121 (77%), Gaps = 3/121 (2%)
Strand=Plus/Minus
Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075
||||| || ||| || ||||| || | ||||| || ||||| ||||| || ||||
Sbjct 23305 GCAAAATCACAGTGAAGGCCCTCATCTCTAGAGATCAGCTCATTTGAGAATGTCAAACCT 23246
Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAA--TGAGCCAGAGAAGAAGA 130133
||||| || ||||||||||| | ||||||||| ||||| || ||| ||| ||||||| |
Sbjct 23245 GGCATTAGTCCCCGCTTCTTAAGCCAGAAAATAGCACAGAAGCTGAACCA-AGAAGAAAA 23187
Query 130134 T 130134
|
Sbjct 23186 T 23186
>seq251
Length=297614
Score = 86.0 bits (94), Expect = 8e-12
Identities = 168/243 (69%), Gaps = 18/243 (7%)
Strand=Plus/Minus
Query 14113 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGT 14169
||| || ||||| ||||||| ||| || || |||| |||||||||||||| || ||
Sbjct 249847 GTTAGTTGCCGCAATGACAATGATACCAGT---GTTACCCTCAAAGCCATCCATTTCTGT 249791
Query 14170 CAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT---CGCAGGCATACCA--CCCGCA 14224
||| || || || | || || || | ||||||||| || |||||| || |
Sbjct 249790 CAAAAGCTGGTTAAGAGTCTGCTCTCTTTCATCATTTCCTCCACCAATACCAGTTCCTCT 249731
Query 14225 CTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATT-TTC 14283
|||| || || ||||| ||||||||||| | || || || || || ||| | |
Sbjct 249730 CTGCCTT-----CCAACGGCATCAATTTCATCCACAAATACAATGCAGGGAGCATTCTCC 249676
Query 14284 ACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCAC 14343
|| | ||| ||| | ||| || |||| |||||| || || ||||||||||| ||
Sbjct 249675 TTGGCCTTCTTGAAA-AGATCACGGACTCGAGAGGCACCAACTCCAACAAACATCTCAAC 249617
Query 14344 AAA 14346
|||
Sbjct 249616 AAA 249614
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618220533411640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |