Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq715 136 5e-27 seq318 125 9e-24 seq2451 116 5e-21 seq1699 86.0 8e-12 seq251 86.0 8e-12 >seq715 Length=381403 Score = 136 bits (150), Expect = 5e-27 Identities = 188/261 (72%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || || || || || ||||| | || |||||||| || || ||||| | ||| Sbjct 115262 GTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAACCCAGGCATCA-ACC 115320 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||| |||||||| || ||||| || || ||||||||||| ||||||||||| || Sbjct 115321 CCGCTTTTTCAACCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAAATCCCCTCCACGCA 115380 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 |||||||| | ||| ||||| || || || ||| | || | ||| |||| ||| Sbjct 115381 AGCGAACGCGAGGAGCCGCTCCGCGAACGACTTGGA---TCCGTCGATCCATTTCAGCGC 115437 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 130266 ||||| ||||| |||| || ||||| || || | ||| || | ||||||| ||||| Sbjct 115438 CCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGGCGTGGAAGAGTTTGTTCTT 115497 Query 130267 TTCTGATGGATCTTTGATGTA 130287 || | ||| |||| ||| Sbjct 115498 CTCATTGGAATCCTTGACGTA 115518 >seq318 Length=266665 Score = 125 bits (138), Expect = 9e-24 Identities = 175/244 (72%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| ||||||||||| || ||||| | ||| ||||||||| ||| || ||||| || || Sbjct 55894 GTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGTCAGTCCCGGCATTAGCCC 55953 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||||| |||||| ||||| || || || |||||||| |||||||| || || Sbjct 55954 GCGCTTCTTCAGCCAGAATATCGCGCAGAAACTCCCGGAGAAGAAAATCCCCTCGACGCA 56013 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAG-GAGCGGGACTTTGTATCAAACCACTTCATCG 130205 |||||||| | || ||||| || ||| ||| || | | |||||| | | Sbjct 56014 AGCGAACGCGATCAGCCGCTCGGCGAAGCTCTCGGCAC----CGCCGATCCACTTGAGAG 56069 Query 130206 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT 130265 |||| | |||||| |||| | || || || | | ||| || | ||||||| |||| Sbjct 56070 CCCAATCCGCCTTCTTCTTCACGCAGGGCACCATGTCGATGGCATGGAAGAGTTTGTTCT 56129 Query 130266 TTTC 130269 | || Sbjct 56130 TCTC 56133 >seq2451 Length=68748 Score = 116 bits (128), Expect = 5e-21 Identities = 173/244 (71%), Gaps = 5/244 (2%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| ||||||||||| || ||||| | ||||||||||||| || || ||||| || || Sbjct 68149 GTGTAGACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGTGAGTCCCGGCATTAGCCC 68090 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||||| |||||| ||||| | || || |||||||| ||||||| || || Sbjct 68089 GCGCTTCTTCAGCCAGAATATCGCGTAGAAACTCCCGGAGAAGAAAATCCCCTTGACGCA 68030 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAG-GAGCGGGACTTTGTATCAAACCACTTCATCG 130205 ||||||| | || ||||| || ||| ||| || || | |||||| | | Sbjct 68029 AACGAACGCTATCAGCCGCTCGGCGAAGCTCTCGGCAC----CGTCGATCCACTTGAGAG 67974 Query 130206 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT 130265 |||| | |||||| |||| | || || || || | ||| || | |||||| |||| Sbjct 67973 CCCAATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCGATGGCATGGGAGAGTTTGTTCT 67914 Query 130266 TTTC 130269 | || Sbjct 67913 TCTC 67910 >seq1699 Length=96573 Score = 86.0 bits (94), Expect = 8e-12 Identities = 93/121 (77%), Gaps = 3/121 (2%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| || ||||| || | ||||| || ||||| ||||| || |||| Sbjct 23305 GCAAAATCACAGTGAAGGCCCTCATCTCTAGAGATCAGCTCATTTGAGAATGTCAAACCT 23246 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAA--TGAGCCAGAGAAGAAGA 130133 ||||| || ||||||||||| | ||||||||| ||||| || ||| ||| ||||||| | Sbjct 23245 GGCATTAGTCCCCGCTTCTTAAGCCAGAAAATAGCACAGAAGCTGAACCA-AGAAGAAAA 23187 Query 130134 T 130134 | Sbjct 23186 T 23186 >seq251 Length=297614 Score = 86.0 bits (94), Expect = 8e-12 Identities = 168/243 (69%), Gaps = 18/243 (7%) Strand=Plus/Minus Query 14113 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGT 14169 ||| || ||||| ||||||| ||| || || |||| |||||||||||||| || || Sbjct 249847 GTTAGTTGCCGCAATGACAATGATACCAGT---GTTACCCTCAAAGCCATCCATTTCTGT 249791 Query 14170 CAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT---CGCAGGCATACCA--CCCGCA 14224 ||| || || || | || || || | ||||||||| || |||||| || | Sbjct 249790 CAAAAGCTGGTTAAGAGTCTGCTCTCTTTCATCATTTCCTCCACCAATACCAGTTCCTCT 249731 Query 14225 CTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATT-TTC 14283 |||| || || ||||| ||||||||||| | || || || || || ||| | | Sbjct 249730 CTGCCTT-----CCAACGGCATCAATTTCATCCACAAATACAATGCAGGGAGCATTCTCC 249676 Query 14284 ACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCAC 14343 || | ||| ||| | ||| || |||| |||||| || || ||||||||||| || Sbjct 249675 TTGGCCTTCTTGAAA-AGATCACGGACTCGAGAGGCACCAACTCCAACAAACATCTCAAC 249617 Query 14344 AAA 14346 ||| Sbjct 249616 AAA 249614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618220533411640