Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq251 134 2e-26
seq318 118 1e-21
seq715 116 4e-21
seq2451 102 1e-16
seq33 100 3e-16
seq1535 96.9 4e-15
seq149 84.2 3e-11
seq7 82.4 9e-11
>seq251
Length=297614
Score = 134 bits (148), Expect = 2e-26
Identities = 273/400 (68%), Gaps = 4/400 (1%)
Strand=Plus/Minus
Query 9575 TTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9634
|| || || || ||||||| ||||| || | | ||||| |||||||| |||||||||
Sbjct 249846 TTAGTTGCCGCAATGACAATGATACCAGTGTTACCCTCAAAGCCATCCATTTCTGTCAAA 249787
Query 9635 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGC 9694
|| ||||||| ||| || || | ||||||||| || | ||||| | | |||
Sbjct 249786 AGCTGGTTAAGAGTCTGCTCTCTTTCATCATTTCCTCCACCAATACCAGTTCCTCTCTGC 249727
Query 9695 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGAC 9753
|||| ||||||||||| ||||| | || || ||||| || ||| | | | | |
Sbjct 249726 CTTCCAACGGCATCAATTTCATCCACAAATACAATGCAGGGAGCATTCTCCTTGGCCTTC 249667
Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813
|| ||| ||||| || || || ||| || || |||||||||||||| ||||| | |
Sbjct 249666 TTGAAA-AGATCACGGACTCGAGAGGCACCAACTCCAACAAACATCTCAACAAATTCAGA 249608
Query 9814 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872
| | | || | || || || ||| || |||||| ||||| ||| || |||||||
Sbjct 249607 ACCTG-AGATGGAGAAAAAAGGCACACCAGCTTCACCTGCAATTGCTTTAGCTAGAAGAG 249549
Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTC 9932
|||| || || || || || |||||| |||| || || || |||
Sbjct 249548 TCTTTCCTGTGCCAGGGGGGCCAATAAGGAGGACACCCTTAGGGATGCGTGCACCAACAG 249489
Query 9933 CAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972
|| | |||||||||||| ||| || || || |||| |||
Sbjct 249488 CAGTGAATCTCTCAGGTTTCTTTAGGAATTCAACAACTTC 249449
>seq318
Length=266665
Score = 118 bits (130), Expect = 1e-21
Identities = 184/261 (70%), Gaps = 3/261 (1%)
Strand=Plus/Minus
Query 94684 TATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGT 94743
||||| ||||| | ||||||||| | ||||| | |||||| | | || || ||
Sbjct 56151 TATATCAAGGACTCCGATGAGAAGAACAAACTCTTCCATGCCATCGACATGGTGCCCTGC 56092
Query 94744 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCT 94803
| | ||||| |||||||||||| | |||||| | | | | || | ||| ||
Sbjct 56091 GTGAAGAAGAAGGCGGATTGGGCTCTCAAGTGGATCG--GCGGTGCCGAG-AGCTTCGCC 56035
Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863
||||| || |||| || || || || ||||| || |||||||| || ||||||||
Sbjct 56034 GAGCGGCTGATCGCGTTCGCTTGCGTCGAGGGGATTTTCTTCTCCGGGAGTTTCTGCGCG 55975
Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923
|| | ||||| |||||||| || || ||||| || || |||||| ||||| | |||
Sbjct 55974 ATATTCTGGCTGAAGAAGCGCGGGCTAATGCCGGGACTGACCTTCTCGAACGAATTGATC 55915
Query 94924 TCTCGTGACGAGGGACTCCAC 94944
|| || |||||||| || |||
Sbjct 55914 TCGCGAGACGAGGGTCTACAC 55894
>seq715
Length=381403
Score = 116 bits (128), Expect = 4e-21
Identities = 175/247 (71%), Gaps = 10/247 (4%)
Strand=Plus/Minus
Query 94701 TGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGA 94760
||||||||| | ||||| | |||||| |||| || ||||| | || ||||| || ||
Sbjct 115501 TGAGAAGAACAAACTCTTCCACGCCATCGAAACGGTGCCGTGCGTCCAGAAGAAGGCTGA 115442
Query 94761 TTGGGCTATGAAGTGGTTTGATACA---AAGTCGCGTTCCTTTGCTGAGCGACTCTTCGC 94817
||||| |||| ||| | || | |||||| || || ||||| ||| ||||
Sbjct 115441 GTGGGCGCTGAAATGGATCGACGGATCCAAGTCG------TTCGCGGAGCGGCTCCTCGC 115388
Query 94818 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 94877
|| || || || ||||| || ||||||||||| ||||||||| || | |||| | ||
Sbjct 115387 GTTCGCTTGCGTGGAGGGGATTTTCTTCTCTGGAAGCTTCTGCGCGATATTTTGGTTGAA 115328
Query 94878 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937
||||| ||| | ||||| || | ||||| |||||| | ||||| || || || ||
Sbjct 115327 AAAGCGGGGT-TGATGCCTGGGTTGACTTTCTCGAACGAGTTGATCTCGCGAGATGAAGG 115269
Query 94938 ACTCCAC 94944
|| |||
Sbjct 115268 CCTTCAC 115262
>seq2451
Length=68748
Score = 102 bits (112), Expect = 1e-16
Identities = 172/247 (70%), Gaps = 3/247 (1%)
Strand=Plus/Plus
Query 94698 TGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGC 94757
|| ||||||||| | |||| | |||||| | || || || || | | ||||| ||
Sbjct 67906 TGATGAGAAGAACAAACTCTCCCATGCCATCGACACGGTGCCCTGCGTGAAGAAGAAGGC 67965
Query 94758 GGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGC 94817
|||||||||| | |||||| | | || | || | ||| || ||||| || | ||
Sbjct 67966 GGATTGGGCTCTCAAGTGGATCG--ACGGTGCCGAG-AGCTTCGCCGAGCGGCTGATAGC 68022
Query 94818 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 94877
|| | || || |||| || |||||||| || |||| ||| || | ||||| ||
Sbjct 68023 GTTCGTTTGCGTCAAGGGGATTTTCTTCTCCGGGAGTTTCTACGCGATATTCTGGCTGAA 68082
Query 94878 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937
|||||| || || ||||| || ||| |||||| || || | ||||| || ||||||||
Sbjct 68083 GAAGCGCGGGCTAATGCCGGGACTCACCTTCTCGAATGAATTGATCTCGCGAGACGAGGG 68142
Query 94938 ACTCCAC 94944
|| |||
Sbjct 68143 TCTACAC 68149
>seq33
Length=615807
Score = 100 bits (110), Expect = 3e-16
Identities = 197/287 (69%), Gaps = 22/287 (8%)
Strand=Plus/Plus
Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672
||| ||||||||||| |||| ||| || |||||||| || |||| ||||||||| |
Sbjct 34634 AAACCCATCCATCTCCGTCAGAAGCTGATTAATAGTCTGCTCCCTCTCATCATTCCC--A 34691
Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730
| | | | ||||| | | ||| | ||||| ||||| |||||||||||||| || |||
Sbjct 34692 CCTCCAAGTCCAGCCCCTCTCTGCCTCCCCACAGCATCTATCTCATCAATGAACACTATG 34751
Query 9731 CATGG-----TTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCG 9781
|| || ||||||| || || || || | |||| ||| |||| ||
Sbjct 34752 CAAGGAGCCTTTGATTT-------CGCCTTATCGAACAAGTCCC--TCACTCTTGAAGCA 34802
Query 9782 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTA 9841
|| || || || |||| ||||||||| | | |||| ||| || || || || |
Sbjct 34803 CCAACTCCCACGAACAGCTCCACAAACTCGGAAGCGGCACAAGAGAAAAATGGCACCCCA 34862
Query 9842 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
| ||| || || | |||| || | ||||||||| || ||||| ||
Sbjct 34863 GCTTCTCCAGCCACAGCTCTCGCCAAAAGAGTCTTGCCAGTACCAGG 34909
>seq1535
Length=214281
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/225 (70%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTC-AACGGCT 104199
|||| || | || ||| ||||| ||||||||||||| | | ||| |||| || |
Sbjct 153334 GACTTTGATTATGATTACTTTGGGTTCAAAACCCTTGAAAGGTCCTACCTTCTAAAAGTC 153393
Query 104200 CGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCA 104259
| | || ||| || ||| || ||| ||||||| ||| | || || | || |||||
Sbjct 153394 CAAGGGAAAGTTGTTG-AAAGGCCTCAGCACATGTTGATGAGGGTTGCTGTTGGAATTCA 153452
Query 104260 TGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 104319
| | || |||||||||||| | |||||||| ||| ||||||||| | |||||
Sbjct 153453 CAAGAATGATATTGATTCTGTCATCCAGACATACCACATGATGTCCCAGAGATGGTTCAC 153512
Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364
||| || | ||||| || || ||||| || || ||||| || ||
Sbjct 153513 TCATGCTTCTCCAACTCTTTTTAATGCAGGAACGCCAAGGCCTCA 153557
>seq149
Length=554269
Score = 84.2 bits (92), Expect = 3e-11
Identities = 175/255 (69%), Gaps = 18/255 (7%)
Strand=Plus/Plus
Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615
|||||| || ||| | |||||| ||||| ||||||| | || || | | |||
Sbjct 82206 ATCAAGAATCTCAGGCCTATTCGTGGCGGCAATGACAATGACTCCAGTATTTCCAGTAAA 82265
Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675
||||||||| || ||||| | ||||| | ||||| |||| ||||||||| ||
Sbjct 82266 ACCATCCATTTCCGTCAACAACTGGTTCAGTGTTTGCTCCCTCTCATCATTCCCT---CC 82322
Query 9676 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732
|||| |||| | | ||| | || || |||||||||||||||||||| || | |||
Sbjct 82323 ACCAATCCCAGTTCCTCTCTGCCTGCCTACAGCATCAATCTCATCAATGAAAACCAAGCA 82382
Query 9733 TGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786
|| ||| ||||| | || || || |||| ||| |||| || || ||
Sbjct 82383 GGGGGAATTGGCCTTCGC---CTTGTTGAACAAG-TCCC--TCACTCTTGAAGCCCCAAC 82436
Query 9787 ACCAACAAACATCTC 9801
||||||||||||||
Sbjct 82437 GCCAACAAACATCTC 82451
>seq7
Length=809814
Score = 82.4 bits (90), Expect = 9e-11
Identities = 137/193 (71%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 9782 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATT 9840
|| ||||||||||||||||||| ||| | | | | |||| | || ||| || ||||
Sbjct 237975 CCAACACCAACAAACATCTCCATAAAATCAGATCCAG-ACATAGAGAGGAAAGGCACATC 237917
Query 9841 AGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAG 9900
||||||||| ||| | ||| |||||||| ||||| || || || || ||| | ||
Sbjct 237916 AGATTCACCTGCAGTTGCTTTCGCGAGAAGTGTCTTCCCTGTGCCAGGAGGGCCCACAAG 237857
Query 9901 GAGGGCACCTCGTGGAATCTTGGC-GCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAA 9959
|| |||||| ||||| ||||| ||| ||| | || ||| || | |||||| |
Sbjct 237856 AAGCGCACCTTTAGGAATTTTGGCTCCCAACTCCTCA-TACTTCTTTGGGTTCTTAAGGA 237798
Query 9960 AATCCACAATTTC 9972
| | ||||| |||
Sbjct 237797 AGTGCACAAATTC 237785
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583058342885560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |