Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq251 134 2e-26 seq318 118 1e-21 seq715 116 4e-21 seq2451 102 1e-16 seq33 100 3e-16 seq1535 96.9 4e-15 seq149 84.2 3e-11 seq7 82.4 9e-11 >seq251 Length=297614 Score = 134 bits (148), Expect = 2e-26 Identities = 273/400 (68%), Gaps = 4/400 (1%) Strand=Plus/Minus Query 9575 TTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9634 || || || || ||||||| ||||| || | | ||||| |||||||| ||||||||| Sbjct 249846 TTAGTTGCCGCAATGACAATGATACCAGTGTTACCCTCAAAGCCATCCATTTCTGTCAAA 249787 Query 9635 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGC 9694 || ||||||| ||| || || | ||||||||| || | ||||| | | ||| Sbjct 249786 AGCTGGTTAAGAGTCTGCTCTCTTTCATCATTTCCTCCACCAATACCAGTTCCTCTCTGC 249727 Query 9695 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGAC 9753 |||| ||||||||||| ||||| | || || ||||| || ||| | | | | | Sbjct 249726 CTTCCAACGGCATCAATTTCATCCACAAATACAATGCAGGGAGCATTCTCCTTGGCCTTC 249667 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 || ||| ||||| || || || ||| || || |||||||||||||| ||||| | | Sbjct 249666 TTGAAA-AGATCACGGACTCGAGAGGCACCAACTCCAACAAACATCTCAACAAATTCAGA 249608 Query 9814 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 | | | || | || || || ||| || |||||| ||||| ||| || ||||||| Sbjct 249607 ACCTG-AGATGGAGAAAAAAGGCACACCAGCTTCACCTGCAATTGCTTTAGCTAGAAGAG 249549 Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTC 9932 |||| || || || || || |||||| |||| || || || ||| Sbjct 249548 TCTTTCCTGTGCCAGGGGGGCCAATAAGGAGGACACCCTTAGGGATGCGTGCACCAACAG 249489 Query 9933 CAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 || | |||||||||||| ||| || || || |||| ||| Sbjct 249488 CAGTGAATCTCTCAGGTTTCTTTAGGAATTCAACAACTTC 249449 >seq318 Length=266665 Score = 118 bits (130), Expect = 1e-21 Identities = 184/261 (70%), Gaps = 3/261 (1%) Strand=Plus/Minus Query 94684 TATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGT 94743 ||||| ||||| | ||||||||| | ||||| | |||||| | | || || || Sbjct 56151 TATATCAAGGACTCCGATGAGAAGAACAAACTCTTCCATGCCATCGACATGGTGCCCTGC 56092 Query 94744 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCT 94803 | | ||||| |||||||||||| | |||||| | | | | || | ||| || Sbjct 56091 GTGAAGAAGAAGGCGGATTGGGCTCTCAAGTGGATCG--GCGGTGCCGAG-AGCTTCGCC 56035 Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 ||||| || |||| || || || || ||||| || |||||||| || |||||||| Sbjct 56034 GAGCGGCTGATCGCGTTCGCTTGCGTCGAGGGGATTTTCTTCTCCGGGAGTTTCTGCGCG 55975 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 || | ||||| |||||||| || || ||||| || || |||||| ||||| | ||| Sbjct 55974 ATATTCTGGCTGAAGAAGCGCGGGCTAATGCCGGGACTGACCTTCTCGAACGAATTGATC 55915 Query 94924 TCTCGTGACGAGGGACTCCAC 94944 || || |||||||| || ||| Sbjct 55914 TCGCGAGACGAGGGTCTACAC 55894 >seq715 Length=381403 Score = 116 bits (128), Expect = 4e-21 Identities = 175/247 (71%), Gaps = 10/247 (4%) Strand=Plus/Minus Query 94701 TGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGA 94760 ||||||||| | ||||| | |||||| |||| || ||||| | || ||||| || || Sbjct 115501 TGAGAAGAACAAACTCTTCCACGCCATCGAAACGGTGCCGTGCGTCCAGAAGAAGGCTGA 115442 Query 94761 TTGGGCTATGAAGTGGTTTGATACA---AAGTCGCGTTCCTTTGCTGAGCGACTCTTCGC 94817 ||||| |||| ||| | || | |||||| || || ||||| ||| |||| Sbjct 115441 GTGGGCGCTGAAATGGATCGACGGATCCAAGTCG------TTCGCGGAGCGGCTCCTCGC 115388 Query 94818 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 94877 || || || || ||||| || ||||||||||| ||||||||| || | |||| | || Sbjct 115387 GTTCGCTTGCGTGGAGGGGATTTTCTTCTCTGGAAGCTTCTGCGCGATATTTTGGTTGAA 115328 Query 94878 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||||| ||| | ||||| || | ||||| |||||| | ||||| || || || || Sbjct 115327 AAAGCGGGGT-TGATGCCTGGGTTGACTTTCTCGAACGAGTTGATCTCGCGAGATGAAGG 115269 Query 94938 ACTCCAC 94944 || ||| Sbjct 115268 CCTTCAC 115262 >seq2451 Length=68748 Score = 102 bits (112), Expect = 1e-16 Identities = 172/247 (70%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 94698 TGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGC 94757 || ||||||||| | |||| | |||||| | || || || || | | ||||| || Sbjct 67906 TGATGAGAAGAACAAACTCTCCCATGCCATCGACACGGTGCCCTGCGTGAAGAAGAAGGC 67965 Query 94758 GGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGC 94817 |||||||||| | |||||| | | || | || | ||| || ||||| || | || Sbjct 67966 GGATTGGGCTCTCAAGTGGATCG--ACGGTGCCGAG-AGCTTCGCCGAGCGGCTGATAGC 68022 Query 94818 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 94877 || | || || |||| || |||||||| || |||| ||| || | ||||| || Sbjct 68023 GTTCGTTTGCGTCAAGGGGATTTTCTTCTCCGGGAGTTTCTACGCGATATTCTGGCTGAA 68082 Query 94878 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||| || || ||||| || ||| |||||| || || | ||||| || |||||||| Sbjct 68083 GAAGCGCGGGCTAATGCCGGGACTCACCTTCTCGAATGAATTGATCTCGCGAGACGAGGG 68142 Query 94938 ACTCCAC 94944 || ||| Sbjct 68143 TCTACAC 68149 >seq33 Length=615807 Score = 100 bits (110), Expect = 3e-16 Identities = 197/287 (69%), Gaps = 22/287 (8%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| |||| ||| || |||||||| || |||| ||||||||| | Sbjct 34634 AAACCCATCCATCTCCGTCAGAAGCTGATTAATAGTCTGCTCCCTCTCATCATTCCC--A 34691 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | | | ||||| | | ||| | ||||| ||||| |||||||||||||| || ||| Sbjct 34692 CCTCCAAGTCCAGCCCCTCTCTGCCTCCCCACAGCATCTATCTCATCAATGAACACTATG 34751 Query 9731 CATGG-----TTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCG 9781 || || ||||||| || || || || | |||| ||| |||| || Sbjct 34752 CAAGGAGCCTTTGATTT-------CGCCTTATCGAACAAGTCCC--TCACTCTTGAAGCA 34802 Query 9782 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTA 9841 || || || || |||| ||||||||| | | |||| ||| || || || || | Sbjct 34803 CCAACTCCCACGAACAGCTCCACAAACTCGGAAGCGGCACAAGAGAAAAATGGCACCCCA 34862 Query 9842 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | ||| || || | |||| || | ||||||||| || ||||| || Sbjct 34863 GCTTCTCCAGCCACAGCTCTCGCCAAAAGAGTCTTGCCAGTACCAGG 34909 >seq1535 Length=214281 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTC-AACGGCT 104199 |||| || | || ||| ||||| ||||||||||||| | | ||| |||| || | Sbjct 153334 GACTTTGATTATGATTACTTTGGGTTCAAAACCCTTGAAAGGTCCTACCTTCTAAAAGTC 153393 Query 104200 CGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCA 104259 | | || ||| || ||| || ||| ||||||| ||| | || || | || ||||| Sbjct 153394 CAAGGGAAAGTTGTTG-AAAGGCCTCAGCACATGTTGATGAGGGTTGCTGTTGGAATTCA 153452 Query 104260 TGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 104319 | | || |||||||||||| | |||||||| ||| ||||||||| | ||||| Sbjct 153453 CAAGAATGATATTGATTCTGTCATCCAGACATACCACATGATGTCCCAGAGATGGTTCAC 153512 Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 ||| || | ||||| || || ||||| || || ||||| || || Sbjct 153513 TCATGCTTCTCCAACTCTTTTTAATGCAGGAACGCCAAGGCCTCA 153557 >seq149 Length=554269 Score = 84.2 bits (92), Expect = 3e-11 Identities = 175/255 (69%), Gaps = 18/255 (7%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| || ||| | |||||| ||||| ||||||| | || || | | ||| Sbjct 82206 ATCAAGAATCTCAGGCCTATTCGTGGCGGCAATGACAATGACTCCAGTATTTCCAGTAAA 82265 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| || ||||| | ||||| | ||||| |||| ||||||||| || Sbjct 82266 ACCATCCATTTCCGTCAACAACTGGTTCAGTGTTTGCTCCCTCTCATCATTCCCT---CC 82322 Query 9676 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 |||| |||| | | ||| | || || |||||||||||||||||||| || | ||| Sbjct 82323 ACCAATCCCAGTTCCTCTCTGCCTGCCTACAGCATCAATCTCATCAATGAAAACCAAGCA 82382 Query 9733 TGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || ||| ||||| | || || || |||| ||| |||| || || || Sbjct 82383 GGGGGAATTGGCCTTCGC---CTTGTTGAACAAG-TCCC--TCACTCTTGAAGCCCCAAC 82436 Query 9787 ACCAACAAACATCTC 9801 |||||||||||||| Sbjct 82437 GCCAACAAACATCTC 82451 >seq7 Length=809814 Score = 82.4 bits (90), Expect = 9e-11 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 9782 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATT 9840 || ||||||||||||||||||| ||| | | | | |||| | || ||| || |||| Sbjct 237975 CCAACACCAACAAACATCTCCATAAAATCAGATCCAG-ACATAGAGAGGAAAGGCACATC 237917 Query 9841 AGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAG 9900 ||||||||| ||| | ||| |||||||| ||||| || || || || ||| | || Sbjct 237916 AGATTCACCTGCAGTTGCTTTCGCGAGAAGTGTCTTCCCTGTGCCAGGAGGGCCCACAAG 237857 Query 9901 GAGGGCACCTCGTGGAATCTTGGC-GCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAA 9959 || |||||| ||||| ||||| ||| ||| | || ||| || | |||||| | Sbjct 237856 AAGCGCACCTTTAGGAATTTTGGCTCCCAACTCCTCA-TACTTCTTTGGGTTCTTAAGGA 237798 Query 9960 AATCCACAATTTC 9972 | | ||||| ||| Sbjct 237797 AGTGCACAAATTC 237785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583058342885560