Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq715 109 6e-19
seq1699 82.4 8e-11
>seq715
Length=381403
Score = 109 bits (120), Expect = 6e-19
Identities = 360/550 (65%), Gaps = 11/550 (2%)
Strand=Plus/Minus
Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633
|||||||| | |||| |||| ||||| || | || |||||| | | |||||||
Sbjct 115806 TACCCGGAAATCTGGGAGATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCCGAGGAG 115747
Query 59634 ATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTC 59693
| ||| | || ||||| | ||| || |||| ||||||| || |||
Sbjct 115746 GTCGACTTGTCCCAGGACCTCCCTCACTGGAACTCTCTCACCGCTGACGAGCGCCACTTC 115687
Query 59694 ATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGAC 59753
|||| ||||| || |||||||| || ||||| || || | |||||| | | |
Sbjct 115686 ATCACCCACGTCCTCGCATTCTTCGCCGCCTCCGATGGCATCGTCCTCGAAAATCTCGCC 115627
Query 59754 ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TC 59812
| || ||||| ||||| | || ||||| || | || |||| | ||| ||
Sbjct 115626 GGAAGGTTCATGAAGGAGATCCAGGTGGCGGAGGCTCGTGCCTTATACGGCTTCCAGATC 115567
Query 59813 GTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGA 59872
| || |||| || ||||| |||| ||| ||| || |||| | | ||||||||
Sbjct 115566 GC-CATCGAGAACATTCACTCTGAGATGTATAGTCTCCTGCTCGAAACCTACGTCAAGGA 115508
Query 59873 TCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAA 59931
| | | |||||| || |||| ||||| || ||| | || || || | | |
Sbjct 115507 TTCCAATGAGAAGAACAAACTCTTCCACGCCATCGAAACGGTGCCGTGC-GTCCAGAAGA 115449
Query 59932 AAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCA---TCATTTGCACAACGTCTCA 59988
| || || ||||| || | ||||| | | ||| | || || || | || |||
Sbjct 115448 AGGCTGAGTGGGCGCTGAAATGGATC-GAC--GGATCCAAGTCGTTCGCGGAGCGGCTCC 115392
Query 59989 TAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGC 60048
| || || || |||||||| || || ||||||||||| ||||| || || || |||
Sbjct 115391 TCGCGTTCGCTTGCGTGGAGGGGATTTTCTTCTCTGGAAGCTTCTGCGCGATATTTTGGT 115332
Query 60049 TCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACG 60108
| |||||||| || | ||||| || ||| |||||| |||||| |||| || || || |
Sbjct 115331 TGAAAAAGCG-GGGTTGATGCCTGGGTTGACTTTCTCGAACGAGTTGATCTCGCGAGATG 115273
Query 60109 AGGGCCTCCA 60118
| ||||| ||
Sbjct 115272 AAGGCCTTCA 115263
>seq1699
Length=96573
Score = 82.4 bits (90), Expect = 8e-11
Identities = 85/109 (78%), Gaps = 3/109 (3%)
Strand=Plus/Plus
Query 60012 ATCTTCTTCTCTGGCTCG--TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGC 60069
|| ||||||| ||| || |||||||||||||||||||| || ||||| || || ||||
Sbjct 23186 ATTTTCTTCT-TGGTTCAGCTTCTGTGCTATTTTCTGGCTTAAGAAGCGGGGACTAATGC 23244
Query 60070 CGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118
| || ||| ||||| || |||||||| || | || |||||||| ||
Sbjct 23245 CAGGTTTGACATTCTCAAATGAGCTGATCTCTAGAGATGAGGGCCTTCA 23293
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548334400185360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |