Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq715 109 6e-19 seq1699 82.4 8e-11 >seq715 Length=381403 Score = 109 bits (120), Expect = 6e-19 Identities = 360/550 (65%), Gaps = 11/550 (2%) Strand=Plus/Minus Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633 |||||||| | |||| |||| ||||| || | || |||||| | | ||||||| Sbjct 115806 TACCCGGAAATCTGGGAGATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCCGAGGAG 115747 Query 59634 ATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTC 59693 | ||| | || ||||| | ||| || |||| ||||||| || ||| Sbjct 115746 GTCGACTTGTCCCAGGACCTCCCTCACTGGAACTCTCTCACCGCTGACGAGCGCCACTTC 115687 Query 59694 ATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGAC 59753 |||| ||||| || |||||||| || ||||| || || | |||||| | | | Sbjct 115686 ATCACCCACGTCCTCGCATTCTTCGCCGCCTCCGATGGCATCGTCCTCGAAAATCTCGCC 115627 Query 59754 ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TC 59812 | || ||||| ||||| | || ||||| || | || |||| | ||| || Sbjct 115626 GGAAGGTTCATGAAGGAGATCCAGGTGGCGGAGGCTCGTGCCTTATACGGCTTCCAGATC 115567 Query 59813 GTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGA 59872 | || |||| || ||||| |||| ||| ||| || |||| | | |||||||| Sbjct 115566 GC-CATCGAGAACATTCACTCTGAGATGTATAGTCTCCTGCTCGAAACCTACGTCAAGGA 115508 Query 59873 TCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAA 59931 | | | |||||| || |||| ||||| || ||| | || || || | | | Sbjct 115507 TTCCAATGAGAAGAACAAACTCTTCCACGCCATCGAAACGGTGCCGTGC-GTCCAGAAGA 115449 Query 59932 AAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCA---TCATTTGCACAACGTCTCA 59988 | || || ||||| || | ||||| | | ||| | || || || | || ||| Sbjct 115448 AGGCTGAGTGGGCGCTGAAATGGATC-GAC--GGATCCAAGTCGTTCGCGGAGCGGCTCC 115392 Query 59989 TAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGC 60048 | || || || |||||||| || || ||||||||||| ||||| || || || ||| Sbjct 115391 TCGCGTTCGCTTGCGTGGAGGGGATTTTCTTCTCTGGAAGCTTCTGCGCGATATTTTGGT 115332 Query 60049 TCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACG 60108 | |||||||| || | ||||| || ||| |||||| |||||| |||| || || || | Sbjct 115331 TGAAAAAGCG-GGGTTGATGCCTGGGTTGACTTTCTCGAACGAGTTGATCTCGCGAGATG 115273 Query 60109 AGGGCCTCCA 60118 | ||||| || Sbjct 115272 AAGGCCTTCA 115263 >seq1699 Length=96573 Score = 82.4 bits (90), Expect = 8e-11 Identities = 85/109 (78%), Gaps = 3/109 (3%) Strand=Plus/Plus Query 60012 ATCTTCTTCTCTGGCTCG--TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGC 60069 || ||||||| ||| || |||||||||||||||||||| || ||||| || || |||| Sbjct 23186 ATTTTCTTCT-TGGTTCAGCTTCTGTGCTATTTTCTGGCTTAAGAAGCGGGGACTAATGC 23244 Query 60070 CGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 | || ||| ||||| || |||||||| || | || |||||||| || Sbjct 23245 CAGGTTTGACATTCTCAAATGAGCTGATCTCTAGAGATGAGGGCCTTCA 23293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548334400185360