Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq715 172 6e-38
seq533 87.8 2e-12
seq942 86.0 7e-12
seq674 86.0 7e-12
seq860 84.2 2e-11
>seq715
Length=381403
Score = 172 bits (190), Expect = 6e-38
Identities = 349/505 (69%), Gaps = 15/505 (3%)
Strand=Plus/Plus
Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827
||||||||||| ||||| || ||||| || | | |||||||| | || |||||
Sbjct 115268 GCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAACCCAGGCATCAACCC-CGCTT 115326
Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887
||||||||||| || || |||||| ||| |||||| || || || || || || ||
Sbjct 115327 TTTCAACCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAAATCCCCTCCACGCAAGCGAA 115386
Query 74888 GGCGACAAGGCGTTGCGCGAACGG--TGCATCGGAAGTCATCCAAGTCTGAGCCCATTCA 74945
|||| || || | |||||||| || ||| | | ||||| || | ||||| |||
Sbjct 115387 CGCGAGGAGCCGCTCCGCGAACGACTTGGATCCGTCG--ATCCATTTCAGCGCCCACTCA 115444
Query 74946 GCTTTTCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTC 75004
|| || | | || |||| || || || ||||| || |||||||| | |||||| |
Sbjct 115445 GCCTT-CTTCTGGACGCACGGCACCGTTTCGATGGCGTGGAAGAGTTTGTTCTTCTCATT 115503
Query 75005 GGGATCCTTGACG-AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGT 75063
|| |||||||||| || || || | || || ||| |||| || ||||| ||||
Sbjct 115504 GGAATCCTTGACGTAGGTT-TCGAGCAGGAGACTATACATCTCAGAGTGAATGTTCTCGA 115562
Query 75064 TGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAA 75120
|| ||| |||| | |||| || | || ||||| || | ||| | ||||| ||||
Sbjct 115563 TGG-CGATCTGGAAGCCGTATAAGGCACGAGCCTCCGCCACCTGGATCTCCTTCATGAAC 115621
Query 75121 AATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCA 75180
| | | ||| ||| || | ||||||||| || ||||||||||| || || || ||
Sbjct 115622 CTTCC--GGCGAGATTTTCGAGGACGATGCCATCGGAGGCGGCGAAGAATGCGAGGACGT 115679
Query 75181 TTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCA 75240
|||| ||||||||||| || | ||||| || ||| | |||||| | ||
Sbjct 115680 GGGTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTTCCAGTGAGGGAGGTCCTGGGACA 115739
Query 75241 AATCAATCTCCTCGACCGTCCAGAA 75265
| || | ||||||| | ||||||||
Sbjct 115740 AGTCGACCTCCTCGGCTGTCCAGAA 115764
>seq533
Length=203194
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/75 (87%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 186147 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 186206
Query 79684 TGAGCTACGAAAGCA 79698
||||||| |||||||
Sbjct 186207 TGAGCTATGAAAGCA 186221
>seq942
Length=146648
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||| ||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 141585 TGCTCTCGTTGAGACTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 141644
Query 79684 TGAGCTACGAAAGC 79697
|||||||||| |||
Sbjct 141645 TGAGCTACGAGAGC 141658
>seq674
Length=175359
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||| ||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 133721 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 133780
Query 79684 TGAGCTACGAAAGC 79697
|||||||||| |||
Sbjct 133781 TGAGCTACGAGAGC 133794
>seq860
Length=157486
Score = 84.2 bits (92), Expect = 2e-11
Identities = 65/76 (86%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681
|||||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||
Sbjct 41163 ACTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 41104
Query 79682 ATTGAGCTACGAAAGC 79697
| |||||||||| |||
Sbjct 41103 ACTGAGCTACGAGAGC 41088
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547026054486200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |