Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq715 172 6e-38 seq533 87.8 2e-12 seq942 86.0 7e-12 seq674 86.0 7e-12 seq860 84.2 2e-11 >seq715 Length=381403 Score = 172 bits (190), Expect = 6e-38 Identities = 349/505 (69%), Gaps = 15/505 (3%) Strand=Plus/Plus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||||||||||| ||||| || ||||| || | | |||||||| | || ||||| Sbjct 115268 GCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAACCCAGGCATCAACCC-CGCTT 115326 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||||||||||| || || |||||| ||| |||||| || || || || || || || Sbjct 115327 TTTCAACCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAAATCCCCTCCACGCAAGCGAA 115386 Query 74888 GGCGACAAGGCGTTGCGCGAACGG--TGCATCGGAAGTCATCCAAGTCTGAGCCCATTCA 74945 |||| || || | |||||||| || ||| | | ||||| || | ||||| ||| Sbjct 115387 CGCGAGGAGCCGCTCCGCGAACGACTTGGATCCGTCG--ATCCATTTCAGCGCCCACTCA 115444 Query 74946 GCTTTTCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTC 75004 || || | | || |||| || || || ||||| || |||||||| | |||||| | Sbjct 115445 GCCTT-CTTCTGGACGCACGGCACCGTTTCGATGGCGTGGAAGAGTTTGTTCTTCTCATT 115503 Query 75005 GGGATCCTTGACG-AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGT 75063 || |||||||||| || || || | || || ||| |||| || ||||| |||| Sbjct 115504 GGAATCCTTGACGTAGGTT-TCGAGCAGGAGACTATACATCTCAGAGTGAATGTTCTCGA 115562 Query 75064 TGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAA 75120 || ||| |||| | |||| || | || ||||| || | ||| | ||||| |||| Sbjct 115563 TGG-CGATCTGGAAGCCGTATAAGGCACGAGCCTCCGCCACCTGGATCTCCTTCATGAAC 115621 Query 75121 AATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCA 75180 | | | ||| ||| || | ||||||||| || ||||||||||| || || || || Sbjct 115622 CTTCC--GGCGAGATTTTCGAGGACGATGCCATCGGAGGCGGCGAAGAATGCGAGGACGT 115679 Query 75181 TTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCA 75240 |||| ||||||||||| || | ||||| || ||| | |||||| | || Sbjct 115680 GGGTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTTCCAGTGAGGGAGGTCCTGGGACA 115739 Query 75241 AATCAATCTCCTCGACCGTCCAGAA 75265 | || | ||||||| | |||||||| Sbjct 115740 AGTCGACCTCCTCGGCTGTCCAGAA 115764 >seq533 Length=203194 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 186147 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 186206 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 186207 TGAGCTATGAAAGCA 186221 >seq942 Length=146648 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 141585 TGCTCTCGTTGAGACTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 141644 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 141645 TGAGCTACGAGAGC 141658 >seq674 Length=175359 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 133721 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 133780 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 133781 TGAGCTACGAGAGC 133794 >seq860 Length=157486 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 |||||| ||| |||| | || |||| ||||||||||||||||||||||||||| |||| Sbjct 41163 ACTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 41104 Query 79682 ATTGAGCTACGAAAGC 79697 | |||||||||| ||| Sbjct 41103 ACTGAGCTACGAGAGC 41088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547026054486200