Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq5876 111 2e-19 seq587 107 2e-18 seq5090 93.3 5e-14 seq2140 93.3 5e-14 seq1519 87.8 2e-12 seq389 87.8 2e-12 >seq5876 Length=30518 Score = 111 bits (122), Expect = 2e-19 Identities = 194/281 (69%), Gaps = 5/281 (2%) Strand=Plus/Minus Query 19296 CCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCGT 19355 |||||||| | || |||||||| || ||| | || | | ||| | | ||| || || Sbjct 25381 CCTGTAACTATTCAATATCCTTATGAAAAATTAATTACATTGGAGCGTTTCCGAGGCCGA 25322 Query 19356 ATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTATC 19415 || || | ||| ||||| || ||||| | ||||| || | ||| | ||| | ||||| Sbjct 25321 ATCCATTTTGAATTTGATAAATGTATTCCTTGTGAAGTATATGTTTGTGTAAGTCCTATA 25262 Query 19416 AATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAAGAAGAAAGAACTTAGA--- 19472 ||| | | || || |||||| || | ||| || | || ||| |||| | Sbjct 25261 AATTTGCTTGTTGTTGATTGGAAATTGGA--AACTGATATTAAAAAAAAAACTATTACTT 25204 Query 19473 AATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCA 19532 ||||| || | |||||| ||||| || || ||||||| || |||||||| ||| Sbjct 25203 AATTACAGTATTAATTTTGGAATTTGTATATTTTGTGGTAACTATGTTGAGTATTGTCCA 25144 Query 19533 ACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTAC 19573 ||||| ||| |||| ||||| |||||||||||| | |||| Sbjct 25143 ACAAATTGTTTATCGATGACTGAAGAATATGAACTTTCTAC 25103 >seq587 Length=401750 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 176936 GCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTG 176995 |||| ||||| |||||||| || |||||||| |||||||| ||||| | || | | Sbjct 44407 GCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAG 44466 Query 176996 GTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTA 177055 || || ||| ||| | | ||||| |||| | || ||||||||||||||||||| Sbjct 44467 GTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTTA 44526 Query 177056 TGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 |||| || | |||| |||| ||||| || | ||||| |||||| Sbjct 44527 TGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570 >seq5090 Length=30266 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/130 (76%), Gaps = 7/130 (5%) Strand=Plus/Plus Query 176455 TGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 176514 ||||||||||||| | | | || |||| ||||||||| ||||||||| || || || Sbjct 13002 TGGGAACTTAGTTTCCGTTTGGGTATGCACCCTTGGATCACTGTTGCATATTCAGCTCCT 13061 Query 176515 GTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGAT 176574 || ||||||| | |||||| | |||||||| | ||||||||| || |||||| Sbjct 13062 GT---TGCAGCG----CCGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGAT 13114 Query 176575 GGTATGCCTC 176584 |||||||||| Sbjct 13115 GGTATGCCTC 13124 >seq2140 Length=74954 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 177019 GATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 177078 ||||| |||| |||| ||||||||||||||||||||||| || |||||||||| ||| Sbjct 15945 GATATTATTAATCGTGGTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCTCATAAC 16004 Query 177079 TTCCCACTTGACCTTGCTGCT 177099 ||||| || ||||| |||||| Sbjct 16005 TTCCCCCTAGACCTAGCTGCT 16025 >seq1519 Length=169030 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 176488 TGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTAT 176547 ||||| ||||||||| || || | || | || || | || |||||| | ||||| Sbjct 82757 TGGATTGCTGTTGCATATTCAGCTTCTGTTGCAGCTGCTACCGCCGTTTTCATGATCTAT 82698 Query 176548 CCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAAC 176607 ||| | ||||| || ||| ||||||||||||||| | || || || |||| |||||| Sbjct 82697 CCAATTGGTCATGGGAGTTTTTCTGATGGTATGCCTTTAGGAATCTCTAGTACTTTCAAC 82638 Query 176608 TTTATGTTTGTATTCC 176623 |||||| || |||||| Sbjct 82637 TTTATGATTATATTCC 82622 >seq389 Length=245757 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 177019 GATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 177078 ||||| || | | ||| ||||||||||||||||||||||| || |||||||| | ||| Sbjct 51367 GATATTATTGATCATGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCTTATAAC 51426 Query 177079 TTCCCACTTGACCTTGCTGCT 177099 ||||| |||||||| |||||| Sbjct 51427 TTCCCCCTTGACCTAGCTGCT 51447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603284919550080