Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq379 116 3e-21
seq4991 89.7 4e-13
>seq379
Length=244149
Score = 116 bits (128), Expect = 3e-21
Identities = 157/217 (72%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| ||||| |||||||| || ||||| || ||||| |||| ||||| ||| |
Sbjct 80047 ATGCAGATTTTCGTGAAAACCCTAACTGGTAAGACGATTACCCTTGAGGTCGAGAGCTCT 80106
Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| ||| ||||| || || ||||| ||||| || ||| |||| ||| |
Sbjct 80107 GACACGATAGACAAT--GTTAAGGCGAAAATCCAGGACAAGGAGGGTATTCCTCCGGACC 80164
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| || | |||||||| ||||| ||||||||||||| | | | |||| | ||||| |
Sbjct 80165 AGCAGCGTCTGATTTTTGCTGGAAAGCAATTGGACGACGGAAGGACCTTGGCTGATTATA 80224
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004
| ||||| || ||| ||| | ||| ||||| ||||
Sbjct 80225 ATATCCAGAAGGAGTCCACCCTTCATCTGGTTCTGCG 80261
>seq4991
Length=48504
Score = 89.7 bits (98), Expect = 4e-13
Identities = 161/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
||||||||| ||||||||||| || ||||||||| || || | || || |||||| |
Sbjct 9047 AATGCAAATCTTTGTGAAAACACTCACTGGGAAAACAATCACTTTGGAGGTGGAAAGCTC 8988
Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
| || || ||||| |||||| ||||| || || ||||| | || |||
Sbjct 8987 TGATACCATTGACAAT--GTCAAAGCCAAAATTCAGGATAAGGAAGGCATCCCACCGGAT 8930
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965
||||| || | || ||||| ||||| || | || || | || | |||| || ||
Sbjct 8929 CAGCAGAGGCTTATCTTTGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTG-GTGACTA 8871
Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||| ||||| ||| || | ||||||||| | ||| ||||||| ||
Sbjct 8870 CAACATTCAAAAGGAGTCAACCCTTCATTTGGTTCTCCGTCTGCGTGGTGG 8820
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355741963819863
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |