Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq379 116 3e-21 seq4991 89.7 4e-13 >seq379 Length=244149 Score = 116 bits (128), Expect = 3e-21 Identities = 157/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| |||||||| || ||||| || ||||| |||| ||||| ||| | Sbjct 80047 ATGCAGATTTTCGTGAAAACCCTAACTGGTAAGACGATTACCCTTGAGGTCGAGAGCTCT 80106 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| || || ||||| ||||| || ||| |||| ||| | Sbjct 80107 GACACGATAGACAAT--GTTAAGGCGAAAATCCAGGACAAGGAGGGTATTCCTCCGGACC 80164 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | |||||||| ||||| ||||||||||||| | | | |||| | ||||| | Sbjct 80165 AGCAGCGTCTGATTTTTGCTGGAAAGCAATTGGACGACGGAAGGACCTTGGCTGATTATA 80224 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 | ||||| || ||| ||| | ||| ||||| |||| Sbjct 80225 ATATCCAGAAGGAGTCCACCCTTCATCTGGTTCTGCG 80261 >seq4991 Length=48504 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||||||||| || ||||||||| || || | || || |||||| | Sbjct 9047 AATGCAAATCTTTGTGAAAACACTCACTGGGAAAACAATCACTTTGGAGGTGGAAAGCTC 8988 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || ||||| |||||| ||||| || || ||||| | || ||| Sbjct 8987 TGATACCATTGACAAT--GTCAAAGCCAAAATTCAGGATAAGGAAGGCATCCCACCGGAT 8930 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 ||||| || | || ||||| ||||| || | || || | || | |||| || || Sbjct 8929 CAGCAGAGGCTTATCTTTGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTG-GTGACTA 8871 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| ||||| ||| || | ||||||||| | ||| ||||||| || Sbjct 8870 CAACATTCAAAAGGAGTCAACCCTTCATTTGGTTCTCCGTCTGCGTGGTGG 8820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355741963819863