Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq4991 107 2e-18 seq177 98.7 9e-16 seq536 93.3 4e-14 seq5240 91.5 1e-13 seq379 86.0 5e-12 >seq4991 Length=48504 Score = 107 bits (118), Expect = 2e-18 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || || ||| ||||| || ||||| || ||||||||||| |||| || Sbjct 8610 ACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCAGCAAGTGTTCGACCGTCCTCG 8669 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || ||||| ||||| | |||||| || |||||| | || ||| |||||| Sbjct 8670 AGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCTGGTGGG-ATGCCCTCCTTGTCCTG 8728 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251 |||||| || | | | | || || ||| ||| || |||| |||||| | Sbjct 8729 GATTTTGGCCTTCACATTGTCAATGGTGTCAGAGCT---CTCAACCTCCAGAGTGATAGT 8785 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| ||||| || || || ||||| || ||||| Sbjct 8786 TTTGCCCGTGAGTGTCTTGACAAAAATCTGCAT 8818 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || || ||| ||||| || || || || ||||||| || | || ||| Sbjct 8838 ACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCACCAAGTGTACGACCATCTTCA 8897 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || ||||| ||||| | |||||| || |||||| | || || || ||| Sbjct 8898 AGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGTGGG-ATGCCTTCCTTATCCTG 8956 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251 ||||| ||||| | | | ||||| ||| ||||| |||| ||||| | Sbjct 8957 AATTTTGGCTTTGACATTGTCAATGGTATCAGAGCTT---TCCACCTCCAAAGTGATTGT 9013 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || || || ||||| |||||||||||||| Sbjct 9014 TTTCCCAGTGAGTGTTTTCACAAAGATTTGCAT 9046 >seq177 Length=344453 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || || | ||| | ||||| ||| || || || || || ||||| ||||| Sbjct 69160 CATGCCACCCCTGAGGCGCAGCACCAGATGAAGGGTTGATTCCTTCTGGATATTGTAATC 69101 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||| | || | | | || || | ||| ||||| ||||| || || ||||||||||| | Sbjct 69100 GGCCAAGGTCCTTCCATCCTCCAACTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCAGG 69041 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACT 39232 || | | ||| |||||| ||| || | | | ||| | | | ||| ||| || Sbjct 69040 AGGAATCCCCTCCTTGTCCTGGATCTT-AGCCTTAACGTTGTCGATCGTGTCGGAGCTCT 68982 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | || |||| |||||| ||||||| || || ||||| |||||||| |||||| Sbjct 68981 CGACCTCCAACGTGATCGTTTTTCCGGTAAGGGTTTTCACAAAGATCTGCATC 68929 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| || || || || |||||||| | || || |||| || |||||| Sbjct 68448 TGGAGCGTTGACTCCTTCTGAATGTTGTAATCGGCCAAGGTGCGGCCGTCCTCGAGCTGT 68389 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || ||||||||||| || | || | | ||| |||||| ||| || Sbjct 68388 TTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGGAATCCCCTCCTTGTCCTGGATCTTG 68329 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | |||||| ||| || || | ||||| | || || || Sbjct 68328 GCCTTGA-CGTTGTCGATGGTATCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGT 68270 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTT 39288 || ||||| || ||||| ||||||||| Sbjct 68269 GAGGGTTTTCACGAAGATCTGCATCTTT 68242 >seq536 Length=459343 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/215 (71%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| ||| || || || || ||||| || || || || |||| || Sbjct 381883 CACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCGAGGGTCCGGCCGTCCTC 381824 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 |||||||| || || ||||| |||||||||||||| |||||| | || || |||||| Sbjct 381823 CAGCTGTTTCCCGGCGAATATCAGACGCTGCTGGTCTGGTGGGATCCCT-TCCTTGTCCT 381765 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 ||| ||| ||||| | | | |||||| ||| ||| || || | || || Sbjct 381764 GGATCTTCGCTTTGACATTGTCAATCGTATCAGAGCT---CTCGACCTCGAGGGTTATGG 381708 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | || || |||| ||||| || ||||| |||||| Sbjct 381707 TCTTCCCAGTCAAAGTTTTGACGAAGATCTGCATC 381673 >seq5240 Length=30785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || ||||| ||||| || ||||| | || || | ||| Sbjct 4336 TGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTTCGGCCATCTTCCAACTGC 4277 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || ||||| || |||||||||||||| | ||| | | || |||||| ||| || Sbjct 4276 TTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCTTCCTTGTCCTGGATCTTG 4217 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | || ||| || ||||| |||| ||||| | || || || Sbjct 4216 GCCTTGA-CGTTGTCGATGGTGTCGGAGGATTCCACCTCCAAGGTGATGGTCTTGCCGGT 4158 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || || || |||||||| ||||||| || Sbjct 4157 GAGGGTCTTGACAAAGATCTGCATCTGTA 4129 >seq379 Length=244149 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| ||||| ||| || ||||| || |||||||| || ||||| |||| ||| Sbjct 80027 ACCAGATGGAGCGTCGACTCCTTCTGTATGTTGTAATCGGCGAGCGTTCGGCCGTCCTCA 79968 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC 39170 ||||| ||||| || || || |||||||||||||| Sbjct 79967 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 79933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429400226869097