Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq4991 107 2e-18
seq177 98.7 9e-16
seq536 93.3 4e-14
seq5240 91.5 1e-13
seq379 86.0 5e-12
>seq4991
Length=48504
Score = 107 bits (118), Expect = 2e-18
Identities = 154/213 (72%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||||||| || || ||| ||||| || ||||| || ||||||||||| |||| ||
Sbjct 8610 ACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCAGCAAGTGTTCGACCGTCCTCG 8669
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194
|||||||| || ||||| ||||| | |||||| || |||||| | || ||| ||||||
Sbjct 8670 AGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCTGGTGGG-ATGCCCTCCTTGTCCTG 8728
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251
|||||| || | | | | || || ||| ||| || |||| |||||| |
Sbjct 8729 GATTTTGGCCTTCACATTGTCAATGGTGTCAGAGCT---CTCAACCTCCAGAGTGATAGT 8785
Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| ||||| || || || ||||| || |||||
Sbjct 8786 TTTGCCCGTGAGTGTCTTGACAAAAATCTGCAT 8818
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/213 (71%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||||||| || || ||| ||||| || || || || ||||||| || | || |||
Sbjct 8838 ACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCACCAAGTGTACGACCATCTTCA 8897
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194
||||| || || ||||| ||||| | |||||| || |||||| | || || || |||
Sbjct 8898 AGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGTGGG-ATGCCTTCCTTATCCTG 8956
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251
||||| ||||| | | | ||||| ||| ||||| |||| ||||| |
Sbjct 8957 AATTTTGGCTTTGACATTGTCAATGGTATCAGAGCTT---TCCACCTCCAAAGTGATTGT 9013
Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| || || || ||||| ||||||||||||||
Sbjct 9014 TTTCCCAGTGAGTGTTTTCACAAAGATTTGCAT 9046
>seq177
Length=344453
Score = 98.7 bits (108), Expect = 9e-16
Identities = 163/233 (70%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113
|| ||| || || | ||| | ||||| ||| || || || || || ||||| |||||
Sbjct 69160 CATGCCACCCCTGAGGCGCAGCACCAGATGAAGGGTTGATTCCTTCTGGATATTGTAATC 69101
Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173
||| | || | | | || || | ||| ||||| ||||| || || ||||||||||| |
Sbjct 69100 GGCCAAGGTCCTTCCATCCTCCAACTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCAGG 69041
Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACT 39232
|| | | ||| |||||| ||| || | | | ||| | | | ||| ||| ||
Sbjct 69040 AGGAATCCCCTCCTTGTCCTGGATCTT-AGCCTTAACGTTGTCGATCGTGTCGGAGCTCT 68982
Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285
| || |||| |||||| ||||||| || || ||||| |||||||| ||||||
Sbjct 68981 CGACCTCCAACGTGATCGTTTTTCCGGTAAGGGTTTTCACAAAGATCTGCATC 68929
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/208 (70%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|| ||||| ||| || || || || |||||||| | || || |||| || ||||||
Sbjct 68448 TGGAGCGTTGACTCCTTCTGAATGTTGTAATCGGCCAAGGTGCGGCCGTCCTCGAGCTGT 68389
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
||||| || || || ||||||||||| || | || | | ||| |||||| ||| ||
Sbjct 68388 TTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGGAATCCCCTCCTTGTCCTGGATCTTG 68329
Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260
|||| ||| | | | |||||| ||| || || | ||||| | || || ||
Sbjct 68328 GCCTTGA-CGTTGTCGATGGTATCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGT 68270
Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTT 39288
|| ||||| || ||||| |||||||||
Sbjct 68269 GAGGGTTTTCACGAAGATCTGCATCTTT 68242
>seq536
Length=459343
Score = 93.3 bits (102), Expect = 4e-14
Identities = 152/215 (71%), Gaps = 8/215 (4%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||| || || ||| ||| || || || || ||||| || || || || |||| ||
Sbjct 381883 CACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCGAGGGTCCGGCCGTCCTC 381824
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193
|||||||| || || ||||| |||||||||||||| |||||| | || || ||||||
Sbjct 381823 CAGCTGTTTCCCGGCGAATATCAGACGCTGCTGGTCTGGTGGGATCCCT-TCCTTGTCCT 381765
Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250
||| ||| ||||| | | | |||||| ||| ||| || || | || ||
Sbjct 381764 GGATCTTCGCTTTGACATTGTCAATCGTATCAGAGCT---CTCGACCTCGAGGGTTATGG 381708
Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285
| || || |||| ||||| || ||||| ||||||
Sbjct 381707 TCTTCCCAGTCAAAGTTTTGACGAAGATCTGCATC 381673
>seq5240
Length=30785
Score = 91.5 bits (100), Expect = 1e-13
Identities = 147/209 (70%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|| || ||| ||| || || || ||||| ||||| || ||||| | || || | |||
Sbjct 4336 TGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTTCGGCCATCTTCCAACTGC 4277
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
|| || ||||| || |||||||||||||| | ||| | | || |||||| ||| ||
Sbjct 4276 TTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCTTCCTTGTCCTGGATCTTG 4217
Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260
|||| ||| | | | || ||| || ||||| |||| ||||| | || || ||
Sbjct 4216 GCCTTGA-CGTTGTCGATGGTGTCGGAGGATTCCACCTCCAAGGTGATGGTCTTGCCGGT 4158
Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTA 39289
|| || || |||||||| ||||||| ||
Sbjct 4157 GAGGGTCTTGACAAAGATCTGCATCTGTA 4129
>seq379
Length=244149
Score = 86.0 bits (94), Expect = 5e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||| ||| ||||| ||| || ||||| || |||||||| || ||||| |||| |||
Sbjct 80027 ACCAGATGGAGCGTCGACTCCTTCTGTATGTTGTAATCGGCGAGCGTTCGGCCGTCCTCA 79968
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC 39170
||||| ||||| || || || ||||||||||||||
Sbjct 79967 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 79933
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429400226869097
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |