Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq715 154 2e-32
seq318 131 2e-25
seq1535 118 1e-21
>seq715
Length=381403
Score = 154 bits (170), Expect = 2e-32
Identities = 385/580 (66%), Gaps = 5/580 (1%)
Strand=Plus/Plus
Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197
|| || || ||||| || ||||| |||||||||| || || ||||| || || ||
Sbjct 115245 AAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTC 115304
Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257
| || ||||| | || || ||||| | ||||||||| || ||| |||||| |||
Sbjct 115305 AACCCAGGCATCAACCC-CGCTTTTTCAACCAAAATATCGCGCAGAAGCTTCCAGAGAAG 115363
Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT 48317
|| || || || ||| || || ||| || | ||| || ||| | ||| | | ||
Sbjct 115364 AAAATCCCCTCCACGCAAGCGAACGCGAGGAGCCGCTCCGCG-AAC-GACTTGGATCCGT 115421
Query 48318 --ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 48375
||||| | ||||| ||||||||||||| || || |||| ||||| || || |
Sbjct 115422 CGATCCATTTCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGGCGT 115481
Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435
||||| ||| || |||||| ||| || ||||| || || | | ||||||||||
Sbjct 115482 GGAAGAGTTTGTTCTTCTCATTGGAATCCTTGACGTAGGTTTCGAGCAGGAGACTATACA 115541
Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495
| || |||||||| || || || || ||||| || ||||| || | || || | |
Sbjct 115542 TCTCAGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCCGCCA 115601
Query 48496 TCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555
||| | |||| | || | | | || | ||| || || || ||||| || |
Sbjct 115602 CCTGGATCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCATCGGAGGCGG 115661
Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGT 48615
| || ||||| | || || | || || | |||| | || || |||||||
Sbjct 115662 CGAAGAATGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTTCCAGT 115721
Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675
| || || | || | || || || || |||||||| || || |||||||| || |
Sbjct 115722 GAGGGAGGTCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCCTTCT 115781
Query 48676 TATACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715
| ||||| | ||| || || ||||||||| ||||| ||
Sbjct 115782 TGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACAT 115821
>seq318
Length=266665
Score = 131 bits (144), Expect = 2e-25
Identities = 379/582 (65%), Gaps = 6/582 (1%)
Strand=Plus/Plus
Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197
|| || || || || || || ||||| || |||| || |||||||| || || ||
Sbjct 55877 AAGCAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGTC 55936
Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257
|| || |||||||| || || || || ||||| ||||| || |||| || || |||
Sbjct 55937 AGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCGCGCAGAAACTCCCGGAGAAG 55996
Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT---GGCTTCGTTG 48314
|| || || || ||| || || ||| | || | ||| || | || ||| || |
Sbjct 55997 AAAATCCCCTCGACGCAAGCGAACGCGATCAGCCGCTCGGCGAAGCTCTCGGCACCGCCG 56056
Query 48315 TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374
|||||| | |||||||| ||||||||||| || || |||| | || || |||
Sbjct 56057 ---ATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCATGTCGATGGCA 56113
Query 48375 TTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATAC 48434
| ||||| ||| || |||| | || || | || || || | | || || |||
Sbjct 56114 TGGAAGAGTTTGTTCTTCTCATCGGAGTCCTTGATATAGGTCTCGAGGAGGAGGCTGTAC 56173
Query 48435 ATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTG 48494
|| ||||||||||| || ||||| || ||||| || || || || || ||||| | |
Sbjct 56174 ATCTCGGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGGCTCGGGCTTCCGCG 56233
Query 48495 ATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554
| ||| |||||| | || || |||| | ||||| || ||||| || ||
Sbjct 56234 ACCTGGACCTCCTTCATGAAGCGAGCAGCAAGGTTCTCGAGGACGATTCCGTCGGAGGCG 56293
Query 48555 GCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAG 48614
|| || || || | || || | ||||||| ||| || || | ||||
Sbjct 56294 GCGAAGAAAGCGAGGACGTGGGTGATAAAATGGCGCTCGCCATCGGTGAGGGAGTCCCAG 56353
Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674
| || || | || | || || || ||||| ||||| || || ||||| || ||
Sbjct 56354 TGGCGGAGGTCCTGGGAGAGGTCGACCTCCTCAGCAGTCCAGAAGGAGGCCTCAGCCTTC 56413
Query 48675 TTATACATATTCCATATATCACTGTATTGGATTGGGAAAATA 48716
|| ||||| | ||| || | ||| ||||| ||||| |||
Sbjct 56414 TTGTACATCTCCCAGATTTGGGGGTACTGGATCGGGAACATA 56455
>seq1535
Length=214281
Score = 118 bits (130), Expect = 1e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218
||||| || || | ||| | || || | |||| | || ||||||||||| | ||| ||
Sbjct 153880 CCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAACATTGGGACAATGCCA 153821
Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278
|||||||| |||||||||||| ||||||||| ||| | || ||||| ||| ||| ||
Sbjct 153820 TTAGATGTCCCATTTGTTCCACGAATATAACTCCCAGTAGCTCGAATGTTATGAATTGAG 153761
Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338
| ||| |||||||| || || || | || || |||||| ||||| || ||
Sbjct 153760 ACCCCAATTCCTCCAGCTGATTTGCTGATGACCGCACACTCTTTCAAGGTATCATATATC 153701
Query 78339 CCCTCTATACTGTCATCCATCAT 78361
||||| || || |||||| ||||
Sbjct 153700 CCCTCAATGCTATCATCCTTCAT 153678
Score = 105 bits (116), Expect = 9e-18
Identities = 128/172 (74%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956
|||||| |||||||||||||| || | |||||||||| | |||||| || ||| ||
Sbjct 154692 CTCTCTCTCATATTGAGTATACAGTCTTTCAAATTCAGCACCCCAACAGTCTGCCAGACC 154633
Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015
||| ||||||||||| | ||| ||||| | |||| | | || |||| || |||||
Sbjct 154632 TGGGGCCTCATTTGGGCAAAACAAAGACCACTGTCCAT-TACTTTGGACTCTTTCCATAA 154574
Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067
|||| ||||| | ||| |||||| ||||| ||| | | || ||| || ||
Sbjct 154573 AGAGGTCAGGCACCCAAAGAGCATAAAATAAATCCCTAGCTCGATGCTCCTC 154522
Score = 91.5 bits (100), Expect = 2e-13
Identities = 100/133 (75%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 78199 TCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTG 78258
|||||||||| | ||| || |||||||| |||||||||||| ||||||||| || | |
Sbjct 168992 TCAACATTGGGACAATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTCCCGGTAG 168933
Query 78259 CGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAAC 78318
| ||||| ||| ||| || | ||| |||||||| ||| ||| || | ||| ||
Sbjct 168932 CTCGAATGTTATGAATTGAGACCCCAATTCCTCCGGCCGATTTACTGATGACAGCACACT 168873
Query 78319 GTTTCAATGTATC 78331
|||||| |||||
Sbjct 168872 CTTTCAAGGTATC 168860
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694427671776160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |