Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq715 154 2e-32 seq318 131 2e-25 seq1535 118 1e-21 >seq715 Length=381403 Score = 154 bits (170), Expect = 2e-32 Identities = 385/580 (66%), Gaps = 5/580 (1%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || || || ||||| || ||||| |||||||||| || || ||||| || || || Sbjct 115245 AAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTC 115304 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 | || ||||| | || || ||||| | ||||||||| || ||| |||||| ||| Sbjct 115305 AACCCAGGCATCAACCC-CGCTTTTTCAACCAAAATATCGCGCAGAAGCTTCCAGAGAAG 115363 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT 48317 || || || || ||| || || ||| || | ||| || ||| | ||| | | || Sbjct 115364 AAAATCCCCTCCACGCAAGCGAACGCGAGGAGCCGCTCCGCG-AAC-GACTTGGATCCGT 115421 Query 48318 --ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 48375 ||||| | ||||| ||||||||||||| || || |||| ||||| || || | Sbjct 115422 CGATCCATTTCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGGCGT 115481 Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 ||||| ||| || |||||| ||| || ||||| || || | | |||||||||| Sbjct 115482 GGAAGAGTTTGTTCTTCTCATTGGAATCCTTGACGTAGGTTTCGAGCAGGAGACTATACA 115541 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 | || |||||||| || || || || ||||| || ||||| || | || || | | Sbjct 115542 TCTCAGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCCGCCA 115601 Query 48496 TCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 ||| | |||| | || | | | || | ||| || || || ||||| || | Sbjct 115602 CCTGGATCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCATCGGAGGCGG 115661 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGT 48615 | || ||||| | || || | || || | |||| | || || ||||||| Sbjct 115662 CGAAGAATGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTTCCAGT 115721 Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675 | || || | || | || || || || |||||||| || || |||||||| || | Sbjct 115722 GAGGGAGGTCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCCTTCT 115781 Query 48676 TATACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 | ||||| | ||| || || ||||||||| ||||| || Sbjct 115782 TGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACAT 115821 >seq318 Length=266665 Score = 131 bits (144), Expect = 2e-25 Identities = 379/582 (65%), Gaps = 6/582 (1%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || || || || || || || ||||| || |||| || |||||||| || || || Sbjct 55877 AAGCAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGTC 55936 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 || || |||||||| || || || || ||||| ||||| || |||| || || ||| Sbjct 55937 AGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCGCGCAGAAACTCCCGGAGAAG 55996 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT---GGCTTCGTTG 48314 || || || || ||| || || ||| | || | ||| || | || ||| || | Sbjct 55997 AAAATCCCCTCGACGCAAGCGAACGCGATCAGCCGCTCGGCGAAGCTCTCGGCACCGCCG 56056 Query 48315 TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374 |||||| | |||||||| ||||||||||| || || |||| | || || ||| Sbjct 56057 ---ATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCATGTCGATGGCA 56113 Query 48375 TTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATAC 48434 | ||||| ||| || |||| | || || | || || || | | || || ||| Sbjct 56114 TGGAAGAGTTTGTTCTTCTCATCGGAGTCCTTGATATAGGTCTCGAGGAGGAGGCTGTAC 56173 Query 48435 ATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTG 48494 || ||||||||||| || ||||| || ||||| || || || || || ||||| | | Sbjct 56174 ATCTCGGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGGCTCGGGCTTCCGCG 56233 Query 48495 ATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554 | ||| |||||| | || || |||| | ||||| || ||||| || || Sbjct 56234 ACCTGGACCTCCTTCATGAAGCGAGCAGCAAGGTTCTCGAGGACGATTCCGTCGGAGGCG 56293 Query 48555 GCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAG 48614 || || || || | || || | ||||||| ||| || || | |||| Sbjct 56294 GCGAAGAAAGCGAGGACGTGGGTGATAAAATGGCGCTCGCCATCGGTGAGGGAGTCCCAG 56353 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 | || || | || | || || || ||||| ||||| || || ||||| || || Sbjct 56354 TGGCGGAGGTCCTGGGAGAGGTCGACCTCCTCAGCAGTCCAGAAGGAGGCCTCAGCCTTC 56413 Query 48675 TTATACATATTCCATATATCACTGTATTGGATTGGGAAAATA 48716 || ||||| | ||| || | ||| ||||| ||||| ||| Sbjct 56414 TTGTACATCTCCCAGATTTGGGGGTACTGGATCGGGAACATA 56455 >seq1535 Length=214281 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | ||| | || || | |||| | || ||||||||||| | ||| || Sbjct 153880 CCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAACATTGGGACAATGCCA 153821 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| |||||||||||| ||||||||| ||| | || ||||| ||| ||| || Sbjct 153820 TTAGATGTCCCATTTGTTCCACGAATATAACTCCCAGTAGCTCGAATGTTATGAATTGAG 153761 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | ||| |||||||| || || || | || || |||||| ||||| || || Sbjct 153760 ACCCCAATTCCTCCAGCTGATTTGCTGATGACCGCACACTCTTTCAAGGTATCATATATC 153701 Query 78339 CCCTCTATACTGTCATCCATCAT 78361 ||||| || || |||||| |||| Sbjct 153700 CCCTCAATGCTATCATCCTTCAT 153678 Score = 105 bits (116), Expect = 9e-18 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||| |||||||||||||| || | |||||||||| | |||||| || ||| || Sbjct 154692 CTCTCTCTCATATTGAGTATACAGTCTTTCAAATTCAGCACCCCAACAGTCTGCCAGACC 154633 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 ||| ||||||||||| | ||| ||||| | |||| | | || |||| || ||||| Sbjct 154632 TGGGGCCTCATTTGGGCAAAACAAAGACCACTGTCCAT-TACTTTGGACTCTTTCCATAA 154574 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||| ||||| | ||| |||||| ||||| ||| | | || ||| || || Sbjct 154573 AGAGGTCAGGCACCCAAAGAGCATAAAATAAATCCCTAGCTCGATGCTCCTC 154522 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 78199 TCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTG 78258 |||||||||| | ||| || |||||||| |||||||||||| ||||||||| || | | Sbjct 168992 TCAACATTGGGACAATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTCCCGGTAG 168933 Query 78259 CGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAAC 78318 | ||||| ||| ||| || | ||| |||||||| ||| ||| || | ||| || Sbjct 168932 CTCGAATGTTATGAATTGAGACCCCAATTCCTCCGGCCGATTTACTGATGACAGCACACT 168873 Query 78319 GTTTCAATGTATC 78331 |||||| ||||| Sbjct 168872 CTTTCAAGGTATC 168860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694427671776160