Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq715 165 1e-35
seq1535 136 6e-27
seq1699 84.2 3e-11
>seq715
Length=381403
Score = 165 bits (182), Expect = 1e-35
Identities = 566/872 (65%), Gaps = 13/872 (1%)
Strand=Plus/Plus
Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398
|| ||||| ||||| || | |||||||| ||||| || || |||| ||| || ||
Sbjct 114957 TTCTGGTACTCACCGACCCTCTTCTCGAAGAAATTCGTCTTCCCTTGCAACGAAATTAAC 115016
Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458
||||| ||||||||||||| | ||||| || || | | ||||| | | |
Sbjct 115017 TCCATCCAATCAAACGGATTCGCCACATTGTACATCCTACCGTACCCTAAAGCGTCCAGC 115076
Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518
|| | ||| || ||||| || |||||| |||| | ||||| |||||||| | |
Sbjct 115077 AGCCGATCCGCCACGAACTCGATATACTGGCTCATAAGTTCACCGTTCATTCCCACCAAA 115136
Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578
| || ||||| || | |||||| || ||| || || || | |||
Sbjct 115137 GCGCAGGGCAGAGCGTCGCACACAAACTCCCTCTCGATATCCACCGCGTCGCGCACGATC 115196
Query 46579 GATGTTACTGTTTCCTCACTTGG-TGGATGCATCA--AATGTTTAAACATTAAACATGCA 46635
| ||| ||||| || | | || | ||| ||| || | || || ||
Sbjct 115197 CCCCTGACTCGTTCCTTGCTAAGCTTCATCC-TCAGCAATCCGTAGAGC--AAGCACGCG 115253
Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695
||||| || |||||||||||||||| || || ||||| || || || | |||||||
Sbjct 115254 AAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAACCCAGGC 115313
Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCT 46755
|| | || |||||||| | ||||||||| || ||| |||||| ||||| || ||
Sbjct 115314 ATCAACCC-CGCTTTTTCAACCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAAATCCCC 115372
Query 46756 TCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA--ACTGGCATCATTATGAATCCACC 46813
|| || ||||| |||| || | ||| || | ||| | ||| | |||||
Sbjct 115373 TCCACGCAAGCGAACGCGAGGAGCCGCTCCGCGAACGACTTGGATCCGTCG--ATCCATT 115430
Query 46814 TTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 46873
| | ||||| |||||||| |||| || || |||| ||||| || || | |||||
Sbjct 115431 TCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGGCGTGGAAGAGTT 115490
Query 46874 AGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAAT 46933
||| || |||| ||| || || || || || | | ||||||||||| || || |
Sbjct 115491 TGTTCTTCTCATTGGAATCCTTGACGTAGGTTTCGAGCAGGAGACTATACATCTCAGAGT 115550
Query 46934 GAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCT 46993
||||||| || || || ||||| || ||||| || | || || | | ||| | ||
Sbjct 115551 GAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCCGCCACCTGGATCT 115610
Query 46994 CTGTACAAAATCGTTCAGAC-AAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAAT 47052
| | || | | ||| | | | ||| || || || ||||| || || || |||
Sbjct 115611 C-CTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCATCGGAGGCGGCGAAGAAT 115669
Query 47053 GCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATA 47112
|| | || || | || || | || || | || || ||||||| | ||
Sbjct 115670 GCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTTCCAGTGAGGGAGG 115729
Query 47113 TCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATA 47172
|| | || | || || || || ||||||||||| || |||||||| || || |||||
Sbjct 115730 TCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCCTTCTTGTACATC 115789
Query 47173 TTCCATATATCACGATATTGGATCGGAAAAAT 47204
| ||| || || | ||||||||||| || ||
Sbjct 115790 TCCCAGATTTCCGGGTATTGGATCGGGAACAT 115821
>seq1535
Length=214281
Score = 136 bits (150), Expect = 6e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813
||||| || || | ||| | ||||| | |||| | || ||||||||||| | ||||||
Sbjct 153880 CCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAACATTGGGACAATGCCA 153821
Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873
|||||||| |||||||||||| ||||||||| ||| || ||||| ||| ||| ||
Sbjct 153820 TTAGATGTCCCATTTGTTCCACGAATATAACTCCCAGTAGCTCGAATGTTATGAATTGAG 153761
Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933
| || |||||||| || ||| ||| | ||||| |||||| || ||||| ||
Sbjct 153760 ACCCCAATTCCTCCAGCTGATTTGCTGATGACCGCACACTCTTTCAAGGTATCATATATC 153701
Query 76934 CCCTCTATACTATCATCCATCAT 76956
||||| || ||||||||| ||||
Sbjct 153700 CCCTCAATGCTATCATCCTTCAT 153678
Score = 105 bits (116), Expect = 1e-17
Identities = 121/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 76794 TCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATG 76853
|||||||||| | |||||| |||||||| |||||||||||| ||||||||| || |
Sbjct 168992 TCAACATTGGGACAATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTCCCGGTAG 168933
Query 76854 CACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGC 76913
| ||||| ||| ||| || | || |||||||| ||| |||| ||| | ||||||
Sbjct 168932 CTCGAATGTTATGAATTGAGACCCCAATTCCTCCGGCCGATTTACTGATGACAGCACACT 168873
Query 76914 GTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT 76956
|||||| || ||| | | || || || | |||||| ||||
Sbjct 168872 CTTTCAAGGTATCACATGTTCCTTCAATGCCATCATCTTTCAT 168830
Score = 87.8 bits (96), Expect = 3e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|||||||||||||| | || ||||| ||||||||||||||| | | || | | | |
Sbjct 153545 GTTCCTGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGGGACATCATGTGG 153486
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
||||| | || || | || ||||| | |||||||| ||||| || | |||||||
Sbjct 153485 TATGTCTGGATGACAGAATCAATATCATTCTTGTGAATTCCAACAGCAACCCTCATCAAC 153426
Query 77114 ATATGCTGAGGTCGTTCTACA 77134
|| |||||||| | ||| |||
Sbjct 153425 ATGTGCTGAGGCCTTTCAACA 153405
>seq1699
Length=96573
Score = 84.2 bits (92), Expect = 3e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688
||| ||||||||||| |||||||| ||||||||| || | || || || ||||| |
Sbjct 23309 ACAAGCAAAATCACAGTGAAGGCCCTCATCTCTAGAGATCAGCTCATTTGAGAATGTCAA 23250
Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727
|| ||||||||||| ||||| || ||||| || |||||
Sbjct 23249 ACCTGGCATTAGTCCCCGCTTCTTAAGCCAGAAAATAGC 23211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712686931558080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |