Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq715 165 1e-35 seq1535 136 6e-27 seq1699 84.2 3e-11 >seq715 Length=381403 Score = 165 bits (182), Expect = 1e-35 Identities = 566/872 (65%), Gaps = 13/872 (1%) Strand=Plus/Plus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || ||||| ||||| || | |||||||| ||||| || || |||| ||| || || Sbjct 114957 TTCTGGTACTCACCGACCCTCTTCTCGAAGAAATTCGTCTTCCCTTGCAACGAAATTAAC 115016 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| ||||||||||||| | ||||| || || | | ||||| | | | Sbjct 115017 TCCATCCAATCAAACGGATTCGCCACATTGTACATCCTACCGTACCCTAAAGCGTCCAGC 115076 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 || | ||| || ||||| || |||||| |||| | ||||| |||||||| | | Sbjct 115077 AGCCGATCCGCCACGAACTCGATATACTGGCTCATAAGTTCACCGTTCATTCCCACCAAA 115136 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 | || ||||| || | |||||| || ||| || || || | ||| Sbjct 115137 GCGCAGGGCAGAGCGTCGCACACAAACTCCCTCTCGATATCCACCGCGTCGCGCACGATC 115196 Query 46579 GATGTTACTGTTTCCTCACTTGG-TGGATGCATCA--AATGTTTAAACATTAAACATGCA 46635 | ||| ||||| || | | || | ||| ||| || | || || || Sbjct 115197 CCCCTGACTCGTTCCTTGCTAAGCTTCATCC-TCAGCAATCCGTAGAGC--AAGCACGCG 115253 Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695 ||||| || |||||||||||||||| || || ||||| || || || | ||||||| Sbjct 115254 AAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAACCCAGGC 115313 Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCT 46755 || | || |||||||| | ||||||||| || ||| |||||| ||||| || || Sbjct 115314 ATCAACCC-CGCTTTTTCAACCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAAATCCCC 115372 Query 46756 TCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA--ACTGGCATCATTATGAATCCACC 46813 || || ||||| |||| || | ||| || | ||| | ||| | ||||| Sbjct 115373 TCCACGCAAGCGAACGCGAGGAGCCGCTCCGCGAACGACTTGGATCCGTCG--ATCCATT 115430 Query 46814 TTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 46873 | | ||||| |||||||| |||| || || |||| ||||| || || | ||||| Sbjct 115431 TCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGGCGTGGAAGAGTT 115490 Query 46874 AGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAAT 46933 ||| || |||| ||| || || || || || | | ||||||||||| || || | Sbjct 115491 TGTTCTTCTCATTGGAATCCTTGACGTAGGTTTCGAGCAGGAGACTATACATCTCAGAGT 115550 Query 46934 GAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCT 46993 ||||||| || || || ||||| || ||||| || | || || | | ||| | || Sbjct 115551 GAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCCGCCACCTGGATCT 115610 Query 46994 CTGTACAAAATCGTTCAGAC-AAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAAT 47052 | | || | | ||| | | | ||| || || || ||||| || || || ||| Sbjct 115611 C-CTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCATCGGAGGCGGCGAAGAAT 115669 Query 47053 GCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATA 47112 || | || || | || || | || || | || || ||||||| | || Sbjct 115670 GCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTTCCAGTGAGGGAGG 115729 Query 47113 TCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATA 47172 || | || | || || || || ||||||||||| || |||||||| || || ||||| Sbjct 115730 TCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCCTTCTTGTACATC 115789 Query 47173 TTCCATATATCACGATATTGGATCGGAAAAAT 47204 | ||| || || | ||||||||||| || || Sbjct 115790 TCCCAGATTTCCGGGTATTGGATCGGGAACAT 115821 >seq1535 Length=214281 Score = 136 bits (150), Expect = 6e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| || || | ||| | ||||| | |||| | || ||||||||||| | |||||| Sbjct 153880 CCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAACATTGGGACAATGCCA 153821 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||||||| ||||||||| ||| || ||||| ||| ||| || Sbjct 153820 TTAGATGTCCCATTTGTTCCACGAATATAACTCCCAGTAGCTCGAATGTTATGAATTGAG 153761 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| ||| | ||||| |||||| || ||||| || Sbjct 153760 ACCCCAATTCCTCCAGCTGATTTGCTGATGACCGCACACTCTTTCAAGGTATCATATATC 153701 Query 76934 CCCTCTATACTATCATCCATCAT 76956 ||||| || ||||||||| |||| Sbjct 153700 CCCTCAATGCTATCATCCTTCAT 153678 Score = 105 bits (116), Expect = 1e-17 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 76794 TCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATG 76853 |||||||||| | |||||| |||||||| |||||||||||| ||||||||| || | Sbjct 168992 TCAACATTGGGACAATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTCCCGGTAG 168933 Query 76854 CACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGC 76913 | ||||| ||| ||| || | || |||||||| ||| |||| ||| | |||||| Sbjct 168932 CTCGAATGTTATGAATTGAGACCCCAATTCCTCCGGCCGATTTACTGATGACAGCACACT 168873 Query 76914 GTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT 76956 |||||| || ||| | | || || || | |||||| |||| Sbjct 168872 CTTTCAAGGTATCACATGTTCCTTCAATGCCATCATCTTTCAT 168830 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 |||||||||||||| | || ||||| ||||||||||||||| | | || | | | | Sbjct 153545 GTTCCTGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGGGACATCATGTGG 153486 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||| | || || | || ||||| | |||||||| ||||| || | ||||||| Sbjct 153485 TATGTCTGGATGACAGAATCAATATCATTCTTGTGAATTCCAACAGCAACCCTCATCAAC 153426 Query 77114 ATATGCTGAGGTCGTTCTACA 77134 || |||||||| | ||| ||| Sbjct 153425 ATGTGCTGAGGCCTTTCAACA 153405 >seq1699 Length=96573 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| ||||||||||| |||||||| ||||||||| || | || || || ||||| | Sbjct 23309 ACAAGCAAAATCACAGTGAAGGCCCTCATCTCTAGAGATCAGCTCATTTGAGAATGTCAA 23250 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 || ||||||||||| ||||| || ||||| || ||||| Sbjct 23249 ACCTGGCATTAGTCCCCGCTTCTTAAGCCAGAAAATAGC 23211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712686931558080