Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq752 320 2e-82 seq1263 280 2e-70 seq587 114 2e-20 seq1519 82.4 9e-11 >seq752 Length=193215 Score = 320 bits (354), Expect = 2e-82 Identities = 486/686 (71%), Gaps = 7/686 (1%) Strand=Plus/Minus Query 186021 TTACTT---CTTTTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACG 186077 |||||| || ||||| ||| ||| | || | || |||||| |||| || ||||| Sbjct 189621 TTACTTANGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACC 189562 Query 186078 TTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTT 186136 ||||| || |||||||| || || ||||| ||| || | || || ||| ||||| Sbjct 189561 TTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTT 189503 Query 186137 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 186196 | || || ||||| || |||||||| | | | | ||||| | | |||| || Sbjct 189502 CTTAACCGCCGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATG 189443 Query 186197 GGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTT 186256 |||||||| | ||||||||| | | || |||| |||| | || || || |||| || Sbjct 189442 AGGTCCTGAAGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTT 189383 Query 186257 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAG 186316 ||| || |||||||| | || | || |||||||| ||| | || || ||||| | Sbjct 189382 TGTTGCTCTCCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGC 189323 Query 186317 TCG-TCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCT 186375 ||| ||| | | | || || || ||||| || || || |||| ||| || ||||| | Sbjct 189322 TCGGTCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTT 189264 Query 186376 TTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCT 186435 ||||| ||||||||| || || || || || ||||| |||||||| || ||| | Sbjct 189263 TTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTT 189204 Query 186436 TTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGT 186495 |||| || || || || ||| ||||| | | || ||||||| || || || ||||| | Sbjct 189203 TTGGTGTAGCGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACAT 189144 Query 186496 TGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAA 186555 |||| ||||| || |||||||| || || ||| | | || | |||||||| | || | Sbjct 189143 TGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTA 189084 Query 186556 TCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCA 186615 ||||||||| |||||||||||||||| | | ||||||||| || ||||| |||||| Sbjct 189083 TCCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCC 189024 Query 186616 AAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCT 186675 || || | | || |||| |||||||| ||||| |||||||| || ||| | || | Sbjct 189023 GTGCGTTTAACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTT 188964 Query 186676 GGTCACAGATCTTCGGAATTGCGTTT 186701 |||| || ||||| || |||| ||| Sbjct 188963 GGTCCCAAATCTTTGGGGTTGCTTTT 188938 >seq1263 Length=120960 Score = 280 bits (310), Expect = 2e-70 Identities = 412/578 (71%), Gaps = 4/578 (1%) Strand=Plus/Plus Query 186038 TGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCTGGTATAC 186097 ||| ||| | || | || |||||| |||| || ||||| ||||| || |||||||| Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 186098 CCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCAGTGTCAA 186156 || || ||||| ||| || | || || ||| ||||| | || || ||||| || | Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 54924 Query 186157 CTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGAG 186216 ||||||| | | | | ||||| | | |||| ||||||||||| | ||||||| Sbjct 54925 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGAG 54984 Query 186217 ATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGAGCCT 186276 || | | || |||| |||| | || || || |||| ||||| || |||||||| || | Sbjct 54985 ATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCTT 55044 Query 186277 TTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGGTATCCGT 186335 | | || |||||||| ||| | || || |||||| | ||| ||| | | | || Sbjct 55045 TCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCGA 55103 Query 186336 CCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCCTCATC 186395 || || ||||| || || || |||| ||| || ||||| |||||| ||||||||| || Sbjct 55104 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 55163 Query 186396 TACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATCTTT 186455 || || || || ||||| |||||||| || ||| ||||| || || || || ||| Sbjct 55164 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 55223 Query 186456 AGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATG 186515 ||||| | | || ||||||| || || || ||||| ||||| ||||| || |||||| Sbjct 55224 CGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 55283 Query 186516 GGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAA 186575 || || || ||| | | || | |||||||| | || |||||||||| || ||||||| Sbjct 55284 GGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGAA 55343 Query 186576 AATACTCTTTATGAAGATGGCGAACAAGCAAACACATT 186613 |||||| | | ||||||||| || ||||| ||||| Sbjct 55344 AATACTTTATTTGAAGATGGTGATGCTGCAAATACATT 55381 >seq587 Length=401750 Score = 114 bits (126), Expect = 2e-20 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 184005 TGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCAT 184064 |||| | | | | ||||||||||| || ||||| |||||||| || |||||||| || | Sbjct 44393 TGCTTTAGATATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGT 44452 Query 184065 CATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCT 184124 ||||| ||||||||||||| | || || | || || || | || | || | || Sbjct 44453 AGTTGATAGTCAAGGTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCT 44512 Query 184125 TGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCT 184182 ||| |||||||| ||||| || | |||| |||| ||||| || | ||||| |||||| Sbjct 44513 TGGTATGGAAGTTATGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570 >seq1519 Length=169030 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 183552 CCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAAC 183611 |||| | |||||| | | ||||| |||||| ||| || ||||||| ||||| || Sbjct 82776 CCGTTTGGGTATGTGCCGCTGGATTGCTGTTGCATATTCAGCTTCTGTTGCAGCTGCTAC 82717 Query 183612 CGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGG 183671 ||| || ||| || ||||||| | ||||| || |||| |||||||||||| | || Sbjct 82716 CGCCGTTTTCATGATCTATCCAATTGGTCATGGGAGTTTTTCTGATGGTATGCCTTTAGG 82657 Query 183672 TATCAGTGGCACCTTTAACTATATGCTTGTCTTCC 183706 ||| | | || || |||| |||| || | |||| Sbjct 82656 AATCTCTAGTACTTTCAACTTTATGATTATATTCC 82622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621854471588280