Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_031235.1
Length=194437
Score E
Sequences producing significant alignments: (Bits) Value
seq752 320 2e-82
seq1263 280 2e-70
seq587 114 2e-20
seq1519 82.4 9e-11
>seq752
Length=193215
Score = 320 bits (354), Expect = 2e-82
Identities = 486/686 (71%), Gaps = 7/686 (1%)
Strand=Plus/Minus
Query 186021 TTACTT---CTTTTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACG 186077
|||||| || ||||| ||| ||| | || | || |||||| |||| || |||||
Sbjct 189621 TTACTTANGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACC 189562
Query 186078 TTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTT 186136
||||| || |||||||| || || ||||| ||| || | || || ||| |||||
Sbjct 189561 TTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTT 189503
Query 186137 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 186196
| || || ||||| || |||||||| | | | | ||||| | | |||| ||
Sbjct 189502 CTTAACCGCCGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATG 189443
Query 186197 GGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTT 186256
|||||||| | ||||||||| | | || |||| |||| | || || || |||| ||
Sbjct 189442 AGGTCCTGAAGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTT 189383
Query 186257 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAG 186316
||| || |||||||| | || | || |||||||| ||| | || || ||||| |
Sbjct 189382 TGTTGCTCTCCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGC 189323
Query 186317 TCG-TCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCT 186375
||| ||| | | | || || || ||||| || || || |||| ||| || ||||| |
Sbjct 189322 TCGGTCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTT 189264
Query 186376 TTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCT 186435
||||| ||||||||| || || || || || ||||| |||||||| || ||| |
Sbjct 189263 TTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTT 189204
Query 186436 TTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGT 186495
|||| || || || || ||| ||||| | | || ||||||| || || || ||||| |
Sbjct 189203 TTGGTGTAGCGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACAT 189144
Query 186496 TGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAA 186555
|||| ||||| || |||||||| || || ||| | | || | |||||||| | || |
Sbjct 189143 TGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTA 189084
Query 186556 TCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCA 186615
||||||||| |||||||||||||||| | | ||||||||| || ||||| ||||||
Sbjct 189083 TCCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCC 189024
Query 186616 AAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCT 186675
|| || | | || |||| |||||||| ||||| |||||||| || ||| | || |
Sbjct 189023 GTGCGTTTAACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTT 188964
Query 186676 GGTCACAGATCTTCGGAATTGCGTTT 186701
|||| || ||||| || |||| |||
Sbjct 188963 GGTCCCAAATCTTTGGGGTTGCTTTT 188938
>seq1263
Length=120960
Score = 280 bits (310), Expect = 2e-70
Identities = 412/578 (71%), Gaps = 4/578 (1%)
Strand=Plus/Plus
Query 186038 TGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCTGGTATAC 186097
||| ||| | || | || |||||| |||| || ||||| ||||| || ||||||||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 186098 CCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCAGTGTCAA 186156
|| || ||||| ||| || | || || ||| ||||| | || || ||||| || |
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 54924
Query 186157 CTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGAG 186216
||||||| | | | | ||||| | | |||| ||||||||||| | |||||||
Sbjct 54925 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGAG 54984
Query 186217 ATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGAGCCT 186276
|| | | || |||| |||| | || || || |||| ||||| || |||||||| || |
Sbjct 54985 ATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCTT 55044
Query 186277 TTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGGTATCCGT 186335
| | || |||||||| ||| | || || |||||| | ||| ||| | | | ||
Sbjct 55045 TCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCGA 55103
Query 186336 CCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCCTCATC 186395
|| || ||||| || || || |||| ||| || ||||| |||||| ||||||||| ||
Sbjct 55104 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 55163
Query 186396 TACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATCTTT 186455
|| || || || ||||| |||||||| || ||| ||||| || || || || |||
Sbjct 55164 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 55223
Query 186456 AGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATG 186515
||||| | | || ||||||| || || || ||||| ||||| ||||| || ||||||
Sbjct 55224 CGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 55283
Query 186516 GGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAA 186575
|| || || ||| | | || | |||||||| | || |||||||||| || |||||||
Sbjct 55284 GGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGAA 55343
Query 186576 AATACTCTTTATGAAGATGGCGAACAAGCAAACACATT 186613
|||||| | | ||||||||| || ||||| |||||
Sbjct 55344 AATACTTTATTTGAAGATGGTGATGCTGCAAATACATT 55381
>seq587
Length=401750
Score = 114 bits (126), Expect = 2e-20
Identities = 132/178 (74%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 184005 TGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCAT 184064
|||| | | | | ||||||||||| || ||||| |||||||| || |||||||| || |
Sbjct 44393 TGCTTTAGATATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGT 44452
Query 184065 CATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCT 184124
||||| ||||||||||||| | || || | || || || | || | || | ||
Sbjct 44453 AGTTGATAGTCAAGGTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCT 44512
Query 184125 TGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCT 184182
||| |||||||| ||||| || | |||| |||| ||||| || | ||||| ||||||
Sbjct 44513 TGGTATGGAAGTTATGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570
>seq1519
Length=169030
Score = 82.4 bits (90), Expect = 9e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 183552 CCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAAC 183611
|||| | |||||| | | ||||| |||||| ||| || ||||||| ||||| ||
Sbjct 82776 CCGTTTGGGTATGTGCCGCTGGATTGCTGTTGCATATTCAGCTTCTGTTGCAGCTGCTAC 82717
Query 183612 CGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGG 183671
||| || ||| || ||||||| | ||||| || |||| |||||||||||| | ||
Sbjct 82716 CGCCGTTTTCATGATCTATCCAATTGGTCATGGGAGTTTTTCTGATGGTATGCCTTTAGG 82657
Query 183672 TATCAGTGGCACCTTTAACTATATGCTTGTCTTCC 183706
||| | | || || |||| |||| || | ||||
Sbjct 82656 AATCTCTAGTACTTTCAACTTTATGATTATATTCC 82622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 621854471588280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |