Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq752 356 3e-93 seq1263 311 1e-79 seq124 95.1 1e-14 seq5090 87.8 2e-12 seq371 87.8 2e-12 >seq752 Length=193215 Score = 356 bits (394), Expect = 3e-93 Identities = 489/677 (72%), Gaps = 6/677 (1%) Strand=Plus/Minus Query 165219 CTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACG 165278 || ||||| ||| ||| | ||| | ||||| ||| |||| || || || || || || Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553 Query 165279 AGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTA-CTG 165336 ||||||||||| ||| | || ||||||||| | || || ||||| ||||||| | | Sbjct 189552 TCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCG 189495 Query 165337 CGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTG 165396 | |||||||| ||||| || | | | | ||||| | || | ||||| ||||||| Sbjct 189494 CCGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTG 189435 Query 165397 AGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGC 165456 | | ||||| || || | || ||||||||| | || || || ||||| ||||| || | Sbjct 189434 AAGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTC 189375 Query 165457 TCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTT 165515 ||||||| | || | ||| |||||||| ||| | || || ||||||| || || || Sbjct 189374 TCCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTG 189315 Query 165516 ATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGT 165575 || | | || ||||| ||||| || || ||||||| ||| |||||||| || ||| | Sbjct 189314 TTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCT 189256 Query 165576 GTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTC 165635 || || || || ||||| || || || || |||||||| || || || || || Sbjct 189255 GTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTA 189196 Query 165636 GCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCC 165695 || || || || |||||| | || || |||||||||| ||||| ||||| |||| || Sbjct 189195 GCGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCA 189136 Query 165696 TTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGT 165755 ||||| |||||||| || || ||| | || |||| || |||| | || || |||||| Sbjct 189135 TTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGT 189076 Query 165756 GTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTT 165815 | ||| ||||| |||||||| | |||||||||||| ||||| || ||| || ||| Sbjct 189075 GCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTT 189016 Query 165816 GATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAG 165875 | || || | || ||||||||||| |||||||| |||||||| || ||||| || Sbjct 189015 AACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAA 188956 Query 165876 ATTTTTGGTATTGCTTT 165892 || ||||| ||||||| Sbjct 188955 ATCTTTGGGGTTGCTTT 188939 >seq1263 Length=120960 Score = 311 bits (344), Expect = 1e-79 Identities = 411/564 (73%), Gaps = 6/564 (1%) Strand=Plus/Plus Query 165230 TGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATAC 165289 ||| ||| | ||| | ||||| ||| |||| || || || || || || |||||||| Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 165290 TCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTA-CTGCGGCAGTTTCT 165347 ||| ||| | || ||||||||| | || || ||||| ||||||| | || |||||||| Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923 Query 165348 ACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGG 165407 ||||| || | | | | ||||| | || | |||||||||||||| | ||||| Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGA 54983 Query 165408 GACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCC 165467 || || | || ||||||||| | || || || ||||| ||||| || |||||||| || Sbjct 54984 GATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCT 55043 Query 165468 TTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCG 165526 || | ||| |||||||| ||| | || || |||||||| || || || || | | || Sbjct 55044 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCG 55102 Query 165527 TCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTAT 165586 ||||| ||||| || || ||||||| ||| |||||||| || ||| ||| || || || Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162 Query 165587 GTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTT 165646 ||||| || || || || |||||||| || || || || || || || || || Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222 Query 165647 CCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGAT 165706 |||||| | || || |||||||||| ||||| ||||| |||| || ||||| ||||| Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282 Query 165707 GGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGA 165766 ||| || || ||| | || |||| || |||| | || || ||||||| || ||||| Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342 Query 165767 GAATACTTTGTATGAAGATGGTGA 165790 |||||||| | |||||||||||| Sbjct 55343 AAATACTTTATTTGAAGATGGTGA 55366 >seq124 Length=378598 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 161553 AGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGTCGTGCAG 161612 ||| ||| ||||||||||||||| | || || ||||| | |||||||| | || | Sbjct 235674 AGTTCATCCTTGACGCAGCTGAGAATGCAGGGATGGACCTGCCATACTCGTGCAGGGCTG 235733 Query 161613 GCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGT 161672 | ||||| || | |||||||| || |||| || || || || ||| ||| || Sbjct 235734 GGGCTTGCTCAACATGCGCGGGGAAGATCGTTGAGGGAACAGTGGATCAATCTGACGGGT 235793 Query 161673 CCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCCA 161732 | ||||| || || |||||||| || |||| | ||||| || ||||| ||||| | Sbjct 235794 CATTCCTTGATGACGACCAAATGGAGAAGGGTTATGTGCTGACATGCGTTTCATATCCAA 235853 Query 161733 CGAGCGATTGTGTGATT 161749 | |||||||||||| Sbjct 235854 CTTCGGATTGTGTGATT 235870 >seq5090 Length=30266 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 7/140 (5%) Strand=Plus/Plus Query 164260 GGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATA 164319 |||| |||||||||||||| || |||| | ||||||| |||||||| || ||||| Sbjct 12992 GGGTAGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCACCCTTGGATCACTGTTGCATA 13051 Query 164320 CTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTC 164379 || |||||||| |||||| || || ||| || ||||||| | |||||||| Sbjct 13052 TTCAGCTCCTGT---TGCAGC----GCCGTTTTCTTGATCTATCCAATTGGTCAAGGAAG 13104 Query 164380 TTTCTCTGATGCAATGCCTC 164399 || ||||||| ||||||| Sbjct 13105 CTTTTCTGATGGTATGCCTC 13124 >seq371 Length=442687 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/241 (68%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 161534 TTCTCGTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATC 161593 ||| |||| |||||| || || ||||| |||| |||||||| |||| | || | Sbjct 304579 TTCACGTGCCCAGACGATCAATATATTCTCGACGAGGCTGAGGAGAAGGGTATCGATCTG 304520 Query 161594 AACTACTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACC 161653 |||||| || | ||||| |||| || || ||||| || || | ||| || | Sbjct 304519 CCCTACTCTTGCAGGGCAGGTTCTTGCTCCTCCTGCGCCGGCAAGGTGGTCGAAGGATCG 304460 Query 161654 GTAGACCAAAGCGAC--CAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTC 161711 || |||||| || ||| |||||| || ||||| || | | ||||||| ||| Sbjct 304459 GTGGACCAATCTGATGGCAG--CTTCCTTGATGATGATCAGCTTGGAGCTGGTTTTGTTC 304402 Query 161712 TGACTTGTGTTTCTTATCCCACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAAC 161771 ||||||||||| ||| ||| || || || ||| |||||||| | || || || || | Sbjct 304401 TGACTTGTGTTGCTTTTCCTACCAGTGACGTTGTCATTGAGACACACAAGGAGGAAGATC 304342 Query 161772 T 161772 | Sbjct 304341 T 304341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557460831187080