Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_031242.1
Length=174307
Score E
Sequences producing significant alignments: (Bits) Value
seq752 356 3e-93
seq1263 311 1e-79
seq124 95.1 1e-14
seq5090 87.8 2e-12
seq371 87.8 2e-12
>seq752
Length=193215
Score = 356 bits (394), Expect = 3e-93
Identities = 489/677 (72%), Gaps = 6/677 (1%)
Strand=Plus/Minus
Query 165219 CTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACG 165278
|| ||||| ||| ||| | ||| | ||||| ||| |||| || || || || || ||
Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553
Query 165279 AGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTA-CTG 165336
||||||||||| ||| | || ||||||||| | || || ||||| ||||||| | |
Sbjct 189552 TCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCG 189495
Query 165337 CGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTG 165396
| |||||||| ||||| || | | | | ||||| | || | ||||| |||||||
Sbjct 189494 CCGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTG 189435
Query 165397 AGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGC 165456
| | ||||| || || | || ||||||||| | || || || ||||| ||||| || |
Sbjct 189434 AAGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTC 189375
Query 165457 TCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTT 165515
||||||| | || | ||| |||||||| ||| | || || ||||||| || || ||
Sbjct 189374 TCCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTG 189315
Query 165516 ATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGT 165575
|| | | || ||||| ||||| || || ||||||| ||| |||||||| || ||| |
Sbjct 189314 TTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCT 189256
Query 165576 GTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTC 165635
|| || || || ||||| || || || || |||||||| || || || || ||
Sbjct 189255 GTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTA 189196
Query 165636 GCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCC 165695
|| || || || |||||| | || || |||||||||| ||||| ||||| |||| ||
Sbjct 189195 GCGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCA 189136
Query 165696 TTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGT 165755
||||| |||||||| || || ||| | || |||| || |||| | || || ||||||
Sbjct 189135 TTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGT 189076
Query 165756 GTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTT 165815
| ||| ||||| |||||||| | |||||||||||| ||||| || ||| || |||
Sbjct 189075 GCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTT 189016
Query 165816 GATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAG 165875
| || || | || ||||||||||| |||||||| |||||||| || ||||| ||
Sbjct 189015 AACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAA 188956
Query 165876 ATTTTTGGTATTGCTTT 165892
|| ||||| |||||||
Sbjct 188955 ATCTTTGGGGTTGCTTT 188939
>seq1263
Length=120960
Score = 311 bits (344), Expect = 1e-79
Identities = 411/564 (73%), Gaps = 6/564 (1%)
Strand=Plus/Plus
Query 165230 TGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATAC 165289
||| ||| | ||| | ||||| ||| |||| || || || || || || ||||||||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 165290 TCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTA-CTGCGGCAGTTTCT 165347
||| ||| | || ||||||||| | || || ||||| ||||||| | || ||||||||
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923
Query 165348 ACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGG 165407
||||| || | | | | ||||| | || | |||||||||||||| | |||||
Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGA 54983
Query 165408 GACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCC 165467
|| || | || ||||||||| | || || || ||||| ||||| || |||||||| ||
Sbjct 54984 GATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCT 55043
Query 165468 TTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCG 165526
|| | ||| |||||||| ||| | || || |||||||| || || || || | | ||
Sbjct 55044 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCG 55102
Query 165527 TCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTAT 165586
||||| ||||| || || ||||||| ||| |||||||| || ||| ||| || || ||
Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162
Query 165587 GTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTT 165646
||||| || || || || |||||||| || || || || || || || || ||
Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222
Query 165647 CCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGAT 165706
|||||| | || || |||||||||| ||||| ||||| |||| || ||||| |||||
Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282
Query 165707 GGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGA 165766
||| || || ||| | || |||| || |||| | || || ||||||| || |||||
Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342
Query 165767 GAATACTTTGTATGAAGATGGTGA 165790
|||||||| | ||||||||||||
Sbjct 55343 AAATACTTTATTTGAAGATGGTGA 55366
>seq124
Length=378598
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 161553 AGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGTCGTGCAG 161612
||| ||| ||||||||||||||| | || || ||||| | |||||||| | || |
Sbjct 235674 AGTTCATCCTTGACGCAGCTGAGAATGCAGGGATGGACCTGCCATACTCGTGCAGGGCTG 235733
Query 161613 GCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGT 161672
| ||||| || | |||||||| || |||| || || || || ||| ||| ||
Sbjct 235734 GGGCTTGCTCAACATGCGCGGGGAAGATCGTTGAGGGAACAGTGGATCAATCTGACGGGT 235793
Query 161673 CCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCCA 161732
| ||||| || || |||||||| || |||| | ||||| || ||||| ||||| |
Sbjct 235794 CATTCCTTGATGACGACCAAATGGAGAAGGGTTATGTGCTGACATGCGTTTCATATCCAA 235853
Query 161733 CGAGCGATTGTGTGATT 161749
| ||||||||||||
Sbjct 235854 CTTCGGATTGTGTGATT 235870
>seq5090
Length=30266
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/140 (74%), Gaps = 7/140 (5%)
Strand=Plus/Plus
Query 164260 GGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATA 164319
|||| |||||||||||||| || |||| | ||||||| |||||||| || |||||
Sbjct 12992 GGGTAGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCACCCTTGGATCACTGTTGCATA 13051
Query 164320 CTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTC 164379
|| |||||||| |||||| || || ||| || ||||||| | ||||||||
Sbjct 13052 TTCAGCTCCTGT---TGCAGC----GCCGTTTTCTTGATCTATCCAATTGGTCAAGGAAG 13104
Query 164380 TTTCTCTGATGCAATGCCTC 164399
|| ||||||| |||||||
Sbjct 13105 CTTTTCTGATGGTATGCCTC 13124
>seq371
Length=442687
Score = 87.8 bits (96), Expect = 2e-12
Identities = 165/241 (68%), Gaps = 4/241 (2%)
Strand=Plus/Minus
Query 161534 TTCTCGTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATC 161593
||| |||| |||||| || || ||||| |||| |||||||| |||| | || |
Sbjct 304579 TTCACGTGCCCAGACGATCAATATATTCTCGACGAGGCTGAGGAGAAGGGTATCGATCTG 304520
Query 161594 AACTACTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACC 161653
|||||| || | ||||| |||| || || ||||| || || | ||| || |
Sbjct 304519 CCCTACTCTTGCAGGGCAGGTTCTTGCTCCTCCTGCGCCGGCAAGGTGGTCGAAGGATCG 304460
Query 161654 GTAGACCAAAGCGAC--CAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTC 161711
|| |||||| || ||| |||||| || ||||| || | | ||||||| |||
Sbjct 304459 GTGGACCAATCTGATGGCAG--CTTCCTTGATGATGATCAGCTTGGAGCTGGTTTTGTTC 304402
Query 161712 TGACTTGTGTTTCTTATCCCACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAAC 161771
||||||||||| ||| ||| || || || ||| |||||||| | || || || || |
Sbjct 304401 TGACTTGTGTTGCTTTTCCTACCAGTGACGTTGTCATTGAGACACACAAGGAGGAAGATC 304342
Query 161772 T 161772
|
Sbjct 304341 T 304341
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557460831187080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |