Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_031935.1
Length=186386
Score E
Sequences producing significant alignments: (Bits) Value
seq752 329 4e-85
seq1263 298 7e-76
seq2510 123 3e-23
seq587 98.7 1e-15
seq124 82.4 9e-11
>seq752
Length=193215
Score = 329 bits (364), Expect = 4e-85
Identities = 458/639 (72%), Gaps = 2/639 (0%)
Strand=Plus/Minus
Query 178932 GGCGGTTGGCTCACGGGCACAACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCT 178991
|| || ||| | || || ||||| || || || || ||||||||||| || | ||| |
Sbjct 189585 GGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGT 189526
Query 178992 TCGTATCTTGAGGGATGTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTC 179051
|| ||| | || ||||| |||||| | || || || || || |||||||| | | |
Sbjct 189525 TCCTATTTGGAAGGATGCAATTTCTTAACCGCCGCAGTTTCGACTCCTGCCAATAGTTTA 189466
Query 179052 GGACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTC 179111
| |||||| | | | ||||| ||||| ||||| || |||||||| || ||| |
Sbjct 189465 GCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGGAGATTTGACTCGTTGGTGC 189406
Query 179112 CAACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTC 179171
||| | || || || ||| | ||||| || |||||||| | |||| || ||||||||
Sbjct 189405 CAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCACTTTCGGACTAATAGGTTTT 189346
Query 179172 ATGCTTCGGCAGTTTGAAATCGCACG-TCTAGTCGGTATTCGTCCTTACAATGCAATCGC 179230
||| | || || ||||| | || || ||| || | | || ||||| |||||||||||
Sbjct 189345 ATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAAT-TGCGACCTTATAATGCAATCGC 189287
Query 179231 GTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTC 179290
|| |||| |||||||||||| ||||| ||||| || || || ||||| || || |||||
Sbjct 189286 ATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTC 189227
Query 179291 CTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCT 179350
|||||||||||||| ||||| || || || || || || ||| | || || |
Sbjct 189226 TGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTTTT 189167
Query 179351 ACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCT 179410
|| || || || || ||||| | ||||| || || |||||||| || || ||| | |
Sbjct 189166 CCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATT 189107
Query 179411 GGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGA 179470
||||| || |||| || || || ||||||||||| ||||| || || | ||||||||
Sbjct 189106 GGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA 189047
Query 179471 CAGTGACCAATCAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTC 179530
|||| ||||||||||| || || | || || |||| || || || |||||
Sbjct 189046 TGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACCCAAGCTGAAGAAACTTATTC 188987
Query 179531 GATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGG 179569
||||| || || ||||| || ||||| || ||||||||
Sbjct 188986 AATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGG 188948
>seq1263
Length=120960
Score = 298 bits (330), Expect = 7e-76
Identities = 404/561 (72%), Gaps = 2/561 (0%)
Strand=Plus/Plus
Query 178932 GGCGGTTGGCTCACGGGCACAACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCT 178991
|| || ||| | || || ||||| || || || || ||||||||||| || | ||| |
Sbjct 54822 GGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGT 54881
Query 178992 TCGTATCTTGAGGGATGTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTC 179051
|| ||| | || ||||| |||||| | || || || || || |||||||| | | |
Sbjct 54882 TCCTATTTGGAAGGATGCAATTTCTTAACCGCCGCAGTTTCGACTCCTGCCAATAGTTTA 54941
Query 179052 GGACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTC 179111
| |||||| | | | ||||||||||| ||||| || |||||||| || ||| |
Sbjct 54942 GCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGAGATTTNACTCGTTGGTGC 55001
Query 179112 CAACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTC 179171
||| | || || || ||| | ||||| || |||||||| || |||| || ||||||||
Sbjct 55002 CAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCTTTCGGACTAATAGGTTTT 55061
Query 179172 ATGCTTCGGCAGTTTGAAATCGCACG-TCTAGTCGGTATTCGTCCTTACAATGCAATCGC 179230
||| | || || |||||| | || || ||| || | | || ||||| |||||||||||
Sbjct 55062 ATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCGACCTTATAATGCAATCGC 55120
Query 179231 GTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTC 179290
|| |||| |||||||||||| ||||| ||||| || || || ||||| || || |||||
Sbjct 55121 ATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTC 55180
Query 179291 CTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCT 179350
|||||||||||||| ||||| || || || || || || ||| | || || |
Sbjct 55181 TGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTTTT 55240
Query 179351 ACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCT 179410
|| || || || || ||||| | ||||| || || |||||||| || || ||| | |
Sbjct 55241 CCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATT 55300
Query 179411 GGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGA 179470
||||| || |||| || || || |||||||||| ||||| || || | ||||||||
Sbjct 55301 GGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGAAAATACTTTATTTGAAGA 55360
Query 179471 CAGTGACCAATCAAATACATT 179491
|||| ||||||||||
Sbjct 55361 TGGTGATGCTGCAAATACATT 55381
>seq2510
Length=74850
Score = 123 bits (136), Expect = 3e-23
Identities = 131/173 (76%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 179658 GGTCTTGCACTTAACCTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAG 179717
||||| || || ||||| | || |||||||| |||| || || ||| | || || ||
Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941
Query 179718 GATCCTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCT 179777
|||||||| || ||||| ||||| ||||| || || || || || |||||| | ||||||
Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881
Query 179778 TGGATGGCACCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGT 179830
|||||||| | ||||| || ||||||||| || |||| ||||| || ||
Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGT 56828
>seq587
Length=401750
Score = 98.7 bits (108), Expect = 1e-15
Identities = 134/187 (72%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 178404 CACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 178463
|| |||| | | | | ||||| ||||| |||||||| || |||||||| |||||||| ||
Sbjct 44390 CATTGCTTTAGATATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 44449
Query 178464 CATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGG 178523
| | |||||||| || || | || || | || || || | || | || |
Sbjct 44450 TGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAA 44509
Query 178524 TCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTGACCTCGCTGC 178583
|||||||||||||| ||||| || | |||| |||| ||||| || | ||||| |||||
Sbjct 44510 CCTTGGTATGGAAGTTATGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGC 44569
Query 178584 TGCTGAA 178590
| ||||
Sbjct 44570 TATTGAA 44576
>seq124
Length=378598
Score = 82.4 bits (90), Expect = 9e-11
Identities = 159/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 176162 TGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTG 176221
||| ||| ||| || || || || |||||| | ||||| | || || ||||||||
Sbjct 235666 TGATGATGAGTTCATCCTTGACGCAGCTGAGAATGCAGGGATGGACCTGCCATACTCGTG 235725
Query 176222 CCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAG 176281
| | ||||| || || || | || || || || || | ||| || || ||||||
Sbjct 235726 CAGGGCTGGGGCTTGCTCAACATGCGCGGGGAAGATCGTTGAGGGAACAGTGGATCAATC 235785
Query 176282 CGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTC 176341
|| || ||||||||||| ||||| || || |||| | ||||| || |||||
Sbjct 235786 TGACGGGTCATTCCTTGATGACGACCAAATGGAGAAGGGTTATGTGCTGACATGCGTTTC 235845
Query 176342 ATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAG-GAACTTTA 176392
|||||| || |||||||||||| | || | ||| |||| || |||||
Sbjct 235846 ATATCCAACTTCGGATTGTGTGATTCATACCCA-CAAGGAGAGTGATCTTTA 235896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596100214317040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |