Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq752 329 4e-85 seq1263 298 7e-76 seq2510 123 3e-23 seq587 98.7 1e-15 seq124 82.4 9e-11 >seq752 Length=193215 Score = 329 bits (364), Expect = 4e-85 Identities = 458/639 (72%), Gaps = 2/639 (0%) Strand=Plus/Minus Query 178932 GGCGGTTGGCTCACGGGCACAACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCT 178991 || || ||| | || || ||||| || || || || ||||||||||| || | ||| | Sbjct 189585 GGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGT 189526 Query 178992 TCGTATCTTGAGGGATGTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTC 179051 || ||| | || ||||| |||||| | || || || || || |||||||| | | | Sbjct 189525 TCCTATTTGGAAGGATGCAATTTCTTAACCGCCGCAGTTTCGACTCCTGCCAATAGTTTA 189466 Query 179052 GGACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTC 179111 | |||||| | | | ||||| ||||| ||||| || |||||||| || ||| | Sbjct 189465 GCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGGAGATTTGACTCGTTGGTGC 189406 Query 179112 CAACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTC 179171 ||| | || || || ||| | ||||| || |||||||| | |||| || |||||||| Sbjct 189405 CAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCACTTTCGGACTAATAGGTTTT 189346 Query 179172 ATGCTTCGGCAGTTTGAAATCGCACG-TCTAGTCGGTATTCGTCCTTACAATGCAATCGC 179230 ||| | || || ||||| | || || ||| || | | || ||||| ||||||||||| Sbjct 189345 ATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAAT-TGCGACCTTATAATGCAATCGC 189287 Query 179231 GTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTC 179290 || |||| |||||||||||| ||||| ||||| || || || ||||| || || ||||| Sbjct 189286 ATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTC 189227 Query 179291 CTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCT 179350 |||||||||||||| ||||| || || || || || || ||| | || || | Sbjct 189226 TGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTTTT 189167 Query 179351 ACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCT 179410 || || || || || ||||| | ||||| || || |||||||| || || ||| | | Sbjct 189166 CCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATT 189107 Query 179411 GGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGA 179470 ||||| || |||| || || || ||||||||||| ||||| || || | |||||||| Sbjct 189106 GGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA 189047 Query 179471 CAGTGACCAATCAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTC 179530 |||| ||||||||||| || || | || || |||| || || || ||||| Sbjct 189046 TGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACCCAAGCTGAAGAAACTTATTC 188987 Query 179531 GATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGG 179569 ||||| || || ||||| || ||||| || |||||||| Sbjct 188986 AATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGG 188948 >seq1263 Length=120960 Score = 298 bits (330), Expect = 7e-76 Identities = 404/561 (72%), Gaps = 2/561 (0%) Strand=Plus/Plus Query 178932 GGCGGTTGGCTCACGGGCACAACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCT 178991 || || ||| | || || ||||| || || || || ||||||||||| || | ||| | Sbjct 54822 GGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGT 54881 Query 178992 TCGTATCTTGAGGGATGTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTC 179051 || ||| | || ||||| |||||| | || || || || || |||||||| | | | Sbjct 54882 TCCTATTTGGAAGGATGCAATTTCTTAACCGCCGCAGTTTCGACTCCTGCCAATAGTTTA 54941 Query 179052 GGACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTC 179111 | |||||| | | | ||||||||||| ||||| || |||||||| || ||| | Sbjct 54942 GCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGAGATTTNACTCGTTGGTGC 55001 Query 179112 CAACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTC 179171 ||| | || || || ||| | ||||| || |||||||| || |||| || |||||||| Sbjct 55002 CAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCTTTCGGACTAATAGGTTTT 55061 Query 179172 ATGCTTCGGCAGTTTGAAATCGCACG-TCTAGTCGGTATTCGTCCTTACAATGCAATCGC 179230 ||| | || || |||||| | || || ||| || | | || ||||| ||||||||||| Sbjct 55062 ATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCGACCTTATAATGCAATCGC 55120 Query 179231 GTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTC 179290 || |||| |||||||||||| ||||| ||||| || || || ||||| || || ||||| Sbjct 55121 ATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTC 55180 Query 179291 CTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCT 179350 |||||||||||||| ||||| || || || || || || ||| | || || | Sbjct 55181 TGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTTTT 55240 Query 179351 ACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCT 179410 || || || || || ||||| | ||||| || || |||||||| || || ||| | | Sbjct 55241 CCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATT 55300 Query 179411 GGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGA 179470 ||||| || |||| || || || |||||||||| ||||| || || | |||||||| Sbjct 55301 GGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGAAAATACTTTATTTGAAGA 55360 Query 179471 CAGTGACCAATCAAATACATT 179491 |||| |||||||||| Sbjct 55361 TGGTGATGCTGCAAATACATT 55381 >seq2510 Length=74850 Score = 123 bits (136), Expect = 3e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 179658 GGTCTTGCACTTAACCTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAG 179717 ||||| || || ||||| | || |||||||| |||| || || ||| | || || || Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941 Query 179718 GATCCTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCT 179777 |||||||| || ||||| ||||| ||||| || || || || || |||||| | |||||| Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881 Query 179778 TGGATGGCACCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGT 179830 |||||||| | ||||| || ||||||||| || |||| ||||| || || Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGT 56828 >seq587 Length=401750 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 178404 CACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 178463 || |||| | | | | ||||| ||||| |||||||| || |||||||| |||||||| || Sbjct 44390 CATTGCTTTAGATATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 44449 Query 178464 CATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGG 178523 | | |||||||| || || | || || | || || || | || | || | Sbjct 44450 TGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAA 44509 Query 178524 TCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTGACCTCGCTGC 178583 |||||||||||||| ||||| || | |||| |||| ||||| || | ||||| ||||| Sbjct 44510 CCTTGGTATGGAAGTTATGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGC 44569 Query 178584 TGCTGAA 178590 | |||| Sbjct 44570 TATTGAA 44576 >seq124 Length=378598 Score = 82.4 bits (90), Expect = 9e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 176162 TGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTG 176221 ||| ||| ||| || || || || |||||| | ||||| | || || |||||||| Sbjct 235666 TGATGATGAGTTCATCCTTGACGCAGCTGAGAATGCAGGGATGGACCTGCCATACTCGTG 235725 Query 176222 CCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAG 176281 | | ||||| || || || | || || || || || | ||| || || |||||| Sbjct 235726 CAGGGCTGGGGCTTGCTCAACATGCGCGGGGAAGATCGTTGAGGGAACAGTGGATCAATC 235785 Query 176282 CGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTC 176341 || || ||||||||||| ||||| || || |||| | ||||| || ||||| Sbjct 235786 TGACGGGTCATTCCTTGATGACGACCAAATGGAGAAGGGTTATGTGCTGACATGCGTTTC 235845 Query 176342 ATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAG-GAACTTTA 176392 |||||| || |||||||||||| | || | ||| |||| || ||||| Sbjct 235846 ATATCCAACTTCGGATTGTGTGATTCATACCCA-CAAGGAGAGTGATCTTTA 235896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596100214317040