Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_031944.1
Length=185102
Score E
Sequences producing significant alignments: (Bits) Value
seq752 309 4e-79
seq1263 279 6e-70
seq5090 84.2 3e-11
>seq752
Length=193215
Score = 309 bits (342), Expect = 4e-79
Identities = 472/667 (71%), Gaps = 4/667 (1%)
Strand=Plus/Minus
Query 170661 CTTTTTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACA 170720
|| ||||| ||| ||| | || | || |||||| |||| || || || ||||| ||
Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553
Query 170721 AGTTGGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGG-TGCTAATTTCCTTACAGC 170779
||||| || || ||| | || ||||| || | ||||| ||| |||||| | || ||
Sbjct 189552 TCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGC 189494
Query 170780 GGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGA 170839
|| || || || ||||| || | | | ||||| | | |||| || ||||||||
Sbjct 189493 CGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGA 189434
Query 170840 GTCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCT 170899
| || || ||||| || |||| ||| | || || || |||| ||||| || ||
Sbjct 189433 AGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCT 189374
Query 170900 CCACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCG 170958
|||||| | || | || |||||||| ||| | || || ||||| | ||| ||| |
Sbjct 189373 CCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCT-G 189315
Query 170959 TAGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCG 171018
| | |||| || ||||||||||| ||||||| ||| || ||||| ||||| |
Sbjct 189314 TTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTG 189255
Query 171019 TGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTG 171078
| ||||| || ||||| || || ||||| |||||||||| || || ||||| || |
Sbjct 189254 TATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAG 189195
Query 171079 CAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCAT 171138
| || || || || ||| | || || | ||||| || || || |||||| |||| ||||
Sbjct 189194 CGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCAT 189135
Query 171139 TTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTG 171198
||||||||||||| ||||| ||| | | |||| || |||| | || || |||||||
Sbjct 189134 TTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTG 189075
Query 171199 TTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTG 171258
||| ||||| |||||||| | ||||||||||||| ||||| || || || |||
Sbjct 189074 CTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTA 189015
Query 171259 ACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGA 171318
|| | || || | ||||| || ||||| |||||||| ||||| || || ||||| || |
Sbjct 189014 ACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAA 188955
Query 171319 TTTTTGG 171325
| |||||
Sbjct 188954 TCTTTGG 188948
>seq1263
Length=120960
Score = 279 bits (308), Expect = 6e-70
Identities = 412/579 (71%), Gaps = 4/579 (1%)
Strand=Plus/Plus
Query 170672 TGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTTGGTACAC 170731
||| ||| | || | || |||||| |||| || || || ||||| || ||||| ||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 170732 CCACGGACTTGCAAGTTCGTACCTTGAAGG-TGCTAATTTCCTTACAGCGGCTGTGTCAA 170790
|| ||| | || ||||| || | ||||| ||| |||||| | || || || || || |
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 54924
Query 170791 CGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGG 170850
| ||||| || | | | ||||| | | |||| ||||||||||| | || || |
Sbjct 54925 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGAG 54984
Query 170851 ATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGAGCCT 170910
|||| || |||| ||| | || || || |||| ||||| || |||||||| || |
Sbjct 54985 ATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCTT 55044
Query 170911 TTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGTAGGGATTAGA 170969
| | || |||||||| ||| | || || |||||| | ||| ||| || | ||
Sbjct 55045 TCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCT-GTTCAATTGCGA 55103
Query 170970 CCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCTCATC 171029
|| || ||||||||||| ||||||| ||| || ||||| ||||| || ||||| ||
Sbjct 55104 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 55163
Query 171030 TATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTC 171089
||||| || || ||||| |||||||||| || || ||||| || || || || ||
Sbjct 55164 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 55223
Query 171090 CGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATG 171149
|| ||| | || || | ||||| || || || |||||| |||| |||||||||||||||
Sbjct 55224 CGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 55283
Query 171150 GGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAG 171209
|| ||||| ||| | | |||| || |||| | || || ||||||| || |||||
Sbjct 55284 GGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGAA 55343
Query 171210 AATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTT 171248
|||||||| | ||||||||||||| ||||| || |||
Sbjct 55344 AATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382
>seq5090
Length=30266
Score = 84.2 bits (92), Expect = 3e-11
Identities = 102/140 (73%), Gaps = 7/140 (5%)
Strand=Plus/Plus
Query 169684 GGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTA 169743
|||| ||||||||||| | | ||| ||||||||| |||||||||| |||||| ||
Sbjct 12992 GGGTAGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCACCCTTGGATCACTGTTGCATA 13051
Query 169744 CTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTC 169803
|| ||||| ||||| | ||| |||||| || |||| || |||| |||||
Sbjct 13052 TTCAGCTCCTGTTGCAG-------CGCCGTTTTCTTGATCTATCCAATTGGTCAAGGAAG 13104
Query 169804 GTTCTCTGACGCTATGCCTC 169823
|| ||||| | ||||||||
Sbjct 13105 CTTTTCTGATGGTATGCCTC 13124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 591992840532880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |