Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq752 309 4e-79 seq1263 279 6e-70 seq5090 84.2 3e-11 >seq752 Length=193215 Score = 309 bits (342), Expect = 4e-79 Identities = 472/667 (71%), Gaps = 4/667 (1%) Strand=Plus/Minus Query 170661 CTTTTTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACA 170720 || ||||| ||| ||| | || | || |||||| |||| || || || ||||| || Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553 Query 170721 AGTTGGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGG-TGCTAATTTCCTTACAGC 170779 ||||| || || ||| | || ||||| || | ||||| ||| |||||| | || || Sbjct 189552 TCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGC 189494 Query 170780 GGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGA 170839 || || || || ||||| || | | | ||||| | | |||| || |||||||| Sbjct 189493 CGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGA 189434 Query 170840 GTCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCT 170899 | || || ||||| || |||| ||| | || || || |||| ||||| || || Sbjct 189433 AGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCT 189374 Query 170900 CCACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCG 170958 |||||| | || | || |||||||| ||| | || || ||||| | ||| ||| | Sbjct 189373 CCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCT-G 189315 Query 170959 TAGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCG 171018 | | |||| || ||||||||||| ||||||| ||| || ||||| ||||| | Sbjct 189314 TTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTG 189255 Query 171019 TGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTG 171078 | ||||| || ||||| || || ||||| |||||||||| || || ||||| || | Sbjct 189254 TATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAG 189195 Query 171079 CAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCAT 171138 | || || || || ||| | || || | ||||| || || || |||||| |||| |||| Sbjct 189194 CGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCAT 189135 Query 171139 TTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTG 171198 ||||||||||||| ||||| ||| | | |||| || |||| | || || ||||||| Sbjct 189134 TTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTG 189075 Query 171199 TTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTG 171258 ||| ||||| |||||||| | ||||||||||||| ||||| || || || ||| Sbjct 189074 CTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTA 189015 Query 171259 ACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGA 171318 || | || || | ||||| || ||||| |||||||| ||||| || || ||||| || | Sbjct 189014 ACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAA 188955 Query 171319 TTTTTGG 171325 | ||||| Sbjct 188954 TCTTTGG 188948 >seq1263 Length=120960 Score = 279 bits (308), Expect = 6e-70 Identities = 412/579 (71%), Gaps = 4/579 (1%) Strand=Plus/Plus Query 170672 TGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTTGGTACAC 170731 ||| ||| | || | || |||||| |||| || || || ||||| || ||||| || Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 170732 CCACGGACTTGCAAGTTCGTACCTTGAAGG-TGCTAATTTCCTTACAGCGGCTGTGTCAA 170790 || ||| | || ||||| || | ||||| ||| |||||| | || || || || || | Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 54924 Query 170791 CGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGG 170850 | ||||| || | | | ||||| | | |||| ||||||||||| | || || | Sbjct 54925 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGAG 54984 Query 170851 ATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGAGCCT 170910 |||| || |||| ||| | || || || |||| ||||| || |||||||| || | Sbjct 54985 ATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCTT 55044 Query 170911 TTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGTAGGGATTAGA 170969 | | || |||||||| ||| | || || |||||| | ||| ||| || | || Sbjct 55045 TCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCT-GTTCAATTGCGA 55103 Query 170970 CCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCTCATC 171029 || || ||||||||||| ||||||| ||| || ||||| ||||| || ||||| || Sbjct 55104 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 55163 Query 171030 TATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTC 171089 ||||| || || ||||| |||||||||| || || ||||| || || || || || Sbjct 55164 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 55223 Query 171090 CGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATG 171149 || ||| | || || | ||||| || || || |||||| |||| ||||||||||||||| Sbjct 55224 CGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 55283 Query 171150 GGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAG 171209 || ||||| ||| | | |||| || |||| | || || ||||||| || ||||| Sbjct 55284 GGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGAA 55343 Query 171210 AATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTT 171248 |||||||| | ||||||||||||| ||||| || ||| Sbjct 55344 AATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382 >seq5090 Length=30266 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/140 (73%), Gaps = 7/140 (5%) Strand=Plus/Plus Query 169684 GGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTA 169743 |||| ||||||||||| | | ||| ||||||||| |||||||||| |||||| || Sbjct 12992 GGGTAGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCACCCTTGGATCACTGTTGCATA 13051 Query 169744 CTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTC 169803 || ||||| ||||| | ||| |||||| || |||| || |||| ||||| Sbjct 13052 TTCAGCTCCTGTTGCAG-------CGCCGTTTTCTTGATCTATCCAATTGGTCAAGGAAG 13104 Query 169804 GTTCTCTGACGCTATGCCTC 169823 || ||||| | |||||||| Sbjct 13105 CTTTTCTGATGGTATGCCTC 13124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591992840532880