Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq415 131 4e-25
seq1432 109 1e-18
seq1397 100 6e-16
seq1452 98.7 2e-15
seq1378 98.7 2e-15
seq1175 98.7 2e-15
seq996 98.7 2e-15
seq895 98.7 2e-15
seq894 98.7 2e-15
seq825 98.7 2e-15
seq799 98.7 2e-15
seq791 98.7 2e-15
seq604 98.7 2e-15
seq365 98.7 2e-15
seq331 98.7 2e-15
seq22 98.7 2e-15
seq1206 95.1 3e-14
seq866 89.7 1e-12
>seq415
Length=609146
Score = 131 bits (144), Expect = 4e-25
Identities = 289/427 (68%), Gaps = 6/427 (1%)
Strand=Plus/Minus
Query 230200 TGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAA 230259
|||||||||||||| | || ||||| || || || | ||||| ||||| ||| |
Sbjct 100555 TGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTTTGTTCAATCTTCTGGCTAAAGAAACGA 100496
Query 230260 GGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCAT 230319
|| | |||||||| || | || ||||| || ||| ||| ||||| || || ||
Sbjct 100495 GGACTCATGCCTGGACTAACATTTTCCAACGAATTGATCTCTCGAGACGAAGGACTACAC 100436
Query 230320 CAACAGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAGA-CG-G 230377
| |||| ||| | || | ||| | | |||||| | | ||| || |
Sbjct 100435 TGCGATTTCGCTTGTCTTCTCTACACGCTTCTCAAAACTAAGCTA--AGTGAAGAACGCG 100378
Query 230378 TCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTC 230437
| ||| |||| || || || || |||| ||| | ||||| | || ||||| |||
Sbjct 100377 TGAAATCAATCGTTTGCGACGCGGTCGAAATCGAGAGAGAGTTTGTGTGCGACGCGCTTC 100318
Query 230438 CATGTCGCCTTA-TTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCC 230496
| || ||| || |||| |||||| ||| | ||| | ||||| || || || || ||
Sbjct 100317 CGTG-CGCGTTGGTTGGGATGAACCGTGATTTGATGAGTCAGTATATTGAGTTTGTTGCG 100259
Query 230497 GACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCA 230556
|| | |||| | ||| ||||| |||| ||| |||||| ||| || || ||||
Sbjct 100258 GATAGGCTTTTGGGTGCGCTTGGGTACGGGAAGGTGTACGGTGCTACTAATCCGTTTGAT 100199
Query 230557 TTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGAC 230616
| ||||| || || |||||||||||||| || |||||||| || || ||||| ||||
Sbjct 100198 TGGATGGAACTTATCTCGCTTCAAGGGAAAACTAACTTCTTTGAGAAACGTGTTGGTGAT 100139
Query 230617 TATCAGA 230623
|||||||
Sbjct 100138 TATCAGA 100132
Score = 104 bits (114), Expect = 5e-17
Identities = 145/201 (72%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809
|||| | ||||||||| || || || | || ||||| |||||||| || || | |||
Sbjct 101173 TTCTGTATGTTCCCAATTCACTACCCACAGATCTGGGAAATGTACAAAAAAGCCGAAGCA 101114
Query 229810 ACTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGTGAGAA 229868
| ||||||||| |||| ||||| ||| | | || ||| | ||||||| | ||
Sbjct 101113 TCATTCTGGACCGCTGAAGAAGTAGATCT-ATCACAAGACAACCGCGACTGGGAAAACAA 101055
Query 229869 ACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGA 229928
||||| |||| |||||||| ||||||||||| |||| | ||| ||||| | |||||
Sbjct 101054 TCTCAACGACGGTGAACGTCACTTCATCAAACATGTCCTCGCTTTCTTCGCCGCATCCGA 100995
Query 229929 TGGTATTGTGATGGAAAATCT 229949
|| || || | || |||||
Sbjct 100994 CGGAATCGTATTAGAGAATCT 100974
>seq1432
Length=495105
Score = 109 bits (120), Expect = 1e-18
Identities = 580/897 (65%), Gaps = 46/897 (5%)
Strand=Plus/Plus
Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809
|||| | ||||||||||||||| || | || ||||| ||||||||||| || | ||
Sbjct 65490 TTCTGTATGTTCCCAATCCAATACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCG 65549
Query 229810 ACTTTCTGGACCACTGAGGAAGT---TC-CTCTGAACGCAGACGTCGTCGACTGGCGTGA 229865
| ||||||||| | || ||||| || |||| || || || ||||||| ||
Sbjct 65550 TCCTTCTGGACCGCCGAAGAAGTCGATCTCTCTCAAGACAATCG----CGACTGG---GA 65602
Query 229866 GAAACTCAAT----GACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAG 229921
||||||| | ||||||||||||| |||||||||||| |||| | || ||||| |
Sbjct 65603 -AAACTCACTAACCAACGACGAACGTCACTTCATCAAACACGTCCTCGCCTTCTTCGCCG 65661
Query 229922 GCTCCGATGGTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTT 229980
|| || || || || | || ||||| | | || || ||| || || |||
Sbjct 65662 CATCAGACGGAATCGTTCTCGAGAATCT-CTCAACACGATTCATGTCCGATGTTCAGGTC 65720
Query 229981 CCAGAGGCACGGCAATTTTATGCTTACCAAA---CATTCAACGAATCTATCCATTCTGAA 230037
|||| || || || || | | ||||| || || | ||| ||| ||||||||
Sbjct 65721 TCAGAAGCTCGTGCCTTCTACGGATTCCAAATCGCAATCGA-GAA--TATTCATTCTGAG 65777
Query 230038 CAATATGCTCTGCTTATCGACGCGCTTATTTC--CGACGAGCAAGAACGGAACGAGCTTT 230095
||| ||| ||| |||| | |||| || ||| | |||| | | | || |
Sbjct 65778 ATGTATAGTCTCCTTCTCGA--CACTTACATCAAAGACAACAAAGAGAGAGATCATCTCT 65835
Query 230096 TTGATGCCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGC 230155
|| || || |||| || || || || || ||| | ||||| |||||||
Sbjct 65836 TTCGCGCAATCGAAACAATTCCTTGTGTGACGAAGAAAGCAGAATGGGCAATGAAATGGA 65895
Query 230156 TAGAAC--CTGGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTAT 230213
| ||| | ||| | || || ||| | |||| || | | || |||||||||||
Sbjct 65896 T-CAACGGATCTCAAAGC-TTCGCTGAGAGAATCGTAGCTTTTGCTTGCGTTGAAGGTAT 65953
Query 230214 TCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGG 230273
| || || || || || || | || || ||| || ||| |||| | ||||||||
Sbjct 65954 ATTCTTCTCTGGTAGCTTTTGTTCGATATTCTGGTTGAAGAAACGAGGTTTAATGCCTGG 66013
Query 230274 CCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGA 230333
||| | |||||||| || || | ||||| ||||| || | ||| ||
Sbjct 66014 ACTCACATTCTCTAACGAATTGATTTCGAGAGACGAAGGTCTTCACTGTGATTTC-GCTT 66072
Query 230334 GCTT-ATGTATTCAAAGCTCC--AGAAC-AAGCTACCATTCGAGACG-GTCAAACAAATC 230388
| || || ||| | || | ||||| ||||| | || ||| | ||| ||
Sbjct 66073 GTTTGATCTAT---AGTCTTCTTAGAACTAAGCTTGATGTAGA-ACGTTTGAAATCGATT 66128
Query 230389 ATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT 230448
|| || || ||||| | ||| | ||||| |||| ||||| |||| ||| |||||
Sbjct 66129 GTTTGTGATGCGGTTGAGATCGAGAGAGAGTTTGTTTGCGACGCGCTTCCTTGT-GCCTT 66187
Query 230449 -ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTT 230507
|||| ||||| ||| | ||| | |||||||| || || || || || | | ||
Sbjct 66188 GGTTGGTATGAATCGTGATTTGATGAGTCAGTACATTGAGTTTGTTGCTGATAGGTTATT 66247
Query 230508 TGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAG-AACCCCTTTGCATTTATGGAGC 230566
||| ||||| | | || ||||| | | || || || |||| | |||||
Sbjct 66248 GACTGCGCTTGGGTGTGGTAAGGTGTA-TGGTGTGAGTAATCCTTTTGATTGGATGGAAT 66306
Query 230567 TCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623
| |||||||||||||| || || ||||| || || ||| | || |||| |||||||
Sbjct 66307 TGATTTCGCTTCAAGGTAAAACTAACTTTTTTGAGAAGAGAGTTGGTGAGTATCAGA 66363
>seq1397
Length=63135
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
||||||||||||||||| |||||||||| || || |||| || |||||||||||||||||
Sbjct 41918 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 41977
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 41978 CCCCACGGTGGGC 41990
>seq1452
Length=1491187
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 591929 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 591988
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 591989 CCCACGGTGGGC 592000
>seq1378
Length=778246
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 425439 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 425380
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 425379 CCCACGGTGGGC 425368
>seq1175
Length=251127
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 61343 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 61402
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 61403 CCCACGGTGGGC 61414
>seq996
Length=1382858
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 1361205 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1361146
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 1361145 CCCACGGTGGGC 1361134
>seq895
Length=2238827
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 1802652 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1802711
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 1802712 CCCACGGTGGGC 1802723
>seq894
Length=3336090
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 185883 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 185942
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 185943 CCCACGGTGGGC 185954
Score = 95.1 bits (104), Expect = 3e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 864416 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 864475
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 864476 CCCACCGTGGGC 864487
>seq825
Length=633922
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 203639 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 203580
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 203579 CCCACGGTGGGC 203568
>seq799
Length=1830436
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 170109 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 170050
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 170049 CCCACGGTGGGC 170038
>seq791
Length=177479
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 51885 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 51944
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 51945 CCCACGGTGGGC 51956
>seq604
Length=1062050
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 576077 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 576136
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 576137 CCCACGGTGGGC 576148
>seq365
Length=1485341
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 468914 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 468973
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 468974 CCCACGGTGGGC 468985
>seq331
Length=1137320
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 1069442 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1069383
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 1069382 CCCACGGTGGGC 1069371
>seq22
Length=1040
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 510 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 569
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 570 CCCACGGTGGGC 581
>seq1206
Length=1516661
Score = 95.1 bits (104), Expect = 3e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || |||||||||||||||| |
Sbjct 1348861 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 1348802
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 1348801 CCCACGGTGGGC 1348790
>seq866
Length=976259
Score = 89.7 bits (98), Expect = 1e-12
Identities = 72/87 (83%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 61373 AAGAGATTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGA 61432
|||||||||||||| ||| | ||| ||| | || || ||||||||||||||||| |||||
Sbjct 345479 AAGAGATTGGGGATTTGCAGGAGACTATGTGGAAGCAATGTGGTTGATGTTGCAGCAAGA 345538
Query 61433 TACTCCAGATGACTACGTTATTGCGAC 61459
| |||||||| |||||| |||| ||
Sbjct 345539 GAAGCCAGATGATTACGTTGTTGCAAC 345565
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057793654004570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |