Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq415 131 4e-25 seq1432 109 1e-18 seq1397 100 6e-16 seq1452 98.7 2e-15 seq1378 98.7 2e-15 seq1175 98.7 2e-15 seq996 98.7 2e-15 seq895 98.7 2e-15 seq894 98.7 2e-15 seq825 98.7 2e-15 seq799 98.7 2e-15 seq791 98.7 2e-15 seq604 98.7 2e-15 seq365 98.7 2e-15 seq331 98.7 2e-15 seq22 98.7 2e-15 seq1206 95.1 3e-14 seq866 89.7 1e-12 >seq415 Length=609146 Score = 131 bits (144), Expect = 4e-25 Identities = 289/427 (68%), Gaps = 6/427 (1%) Strand=Plus/Minus Query 230200 TGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAA 230259 |||||||||||||| | || ||||| || || || | ||||| ||||| ||| | Sbjct 100555 TGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTTTGTTCAATCTTCTGGCTAAAGAAACGA 100496 Query 230260 GGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCAT 230319 || | |||||||| || | || ||||| || ||| ||| ||||| || || || Sbjct 100495 GGACTCATGCCTGGACTAACATTTTCCAACGAATTGATCTCTCGAGACGAAGGACTACAC 100436 Query 230320 CAACAGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAGA-CG-G 230377 | |||| ||| | || | ||| | | |||||| | | ||| || | Sbjct 100435 TGCGATTTCGCTTGTCTTCTCTACACGCTTCTCAAAACTAAGCTA--AGTGAAGAACGCG 100378 Query 230378 TCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTC 230437 | ||| |||| || || || || |||| ||| | ||||| | || ||||| ||| Sbjct 100377 TGAAATCAATCGTTTGCGACGCGGTCGAAATCGAGAGAGAGTTTGTGTGCGACGCGCTTC 100318 Query 230438 CATGTCGCCTTA-TTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCC 230496 | || ||| || |||| |||||| ||| | ||| | ||||| || || || || || Sbjct 100317 CGTG-CGCGTTGGTTGGGATGAACCGTGATTTGATGAGTCAGTATATTGAGTTTGTTGCG 100259 Query 230497 GACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCA 230556 || | |||| | ||| ||||| |||| ||| |||||| ||| || || |||| Sbjct 100258 GATAGGCTTTTGGGTGCGCTTGGGTACGGGAAGGTGTACGGTGCTACTAATCCGTTTGAT 100199 Query 230557 TTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGAC 230616 | ||||| || || |||||||||||||| || |||||||| || || ||||| |||| Sbjct 100198 TGGATGGAACTTATCTCGCTTCAAGGGAAAACTAACTTCTTTGAGAAACGTGTTGGTGAT 100139 Query 230617 TATCAGA 230623 ||||||| Sbjct 100138 TATCAGA 100132 Score = 104 bits (114), Expect = 5e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 |||| | ||||||||| || || || | || ||||| |||||||| || || | ||| Sbjct 101173 TTCTGTATGTTCCCAATTCACTACCCACAGATCTGGGAAATGTACAAAAAAGCCGAAGCA 101114 Query 229810 ACTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGTGAGAA 229868 | ||||||||| |||| ||||| ||| | | || ||| | ||||||| | || Sbjct 101113 TCATTCTGGACCGCTGAAGAAGTAGATCT-ATCACAAGACAACCGCGACTGGGAAAACAA 101055 Query 229869 ACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGA 229928 ||||| |||| |||||||| ||||||||||| |||| | ||| ||||| | ||||| Sbjct 101054 TCTCAACGACGGTGAACGTCACTTCATCAAACATGTCCTCGCTTTCTTCGCCGCATCCGA 100995 Query 229929 TGGTATTGTGATGGAAAATCT 229949 || || || | || ||||| Sbjct 100994 CGGAATCGTATTAGAGAATCT 100974 >seq1432 Length=495105 Score = 109 bits (120), Expect = 1e-18 Identities = 580/897 (65%), Gaps = 46/897 (5%) Strand=Plus/Plus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 |||| | ||||||||||||||| || | || ||||| ||||||||||| || | || Sbjct 65490 TTCTGTATGTTCCCAATCCAATACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCG 65549 Query 229810 ACTTTCTGGACCACTGAGGAAGT---TC-CTCTGAACGCAGACGTCGTCGACTGGCGTGA 229865 | ||||||||| | || ||||| || |||| || || || ||||||| || Sbjct 65550 TCCTTCTGGACCGCCGAAGAAGTCGATCTCTCTCAAGACAATCG----CGACTGG---GA 65602 Query 229866 GAAACTCAAT----GACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAG 229921 ||||||| | ||||||||||||| |||||||||||| |||| | || ||||| | Sbjct 65603 -AAACTCACTAACCAACGACGAACGTCACTTCATCAAACACGTCCTCGCCTTCTTCGCCG 65661 Query 229922 GCTCCGATGGTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTT 229980 || || || || || | || ||||| | | || || ||| || || ||| Sbjct 65662 CATCAGACGGAATCGTTCTCGAGAATCT-CTCAACACGATTCATGTCCGATGTTCAGGTC 65720 Query 229981 CCAGAGGCACGGCAATTTTATGCTTACCAAA---CATTCAACGAATCTATCCATTCTGAA 230037 |||| || || || || | | ||||| || || | ||| ||| |||||||| Sbjct 65721 TCAGAAGCTCGTGCCTTCTACGGATTCCAAATCGCAATCGA-GAA--TATTCATTCTGAG 65777 Query 230038 CAATATGCTCTGCTTATCGACGCGCTTATTTC--CGACGAGCAAGAACGGAACGAGCTTT 230095 ||| ||| ||| |||| | |||| || ||| | |||| | | | || | Sbjct 65778 ATGTATAGTCTCCTTCTCGA--CACTTACATCAAAGACAACAAAGAGAGAGATCATCTCT 65835 Query 230096 TTGATGCCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGC 230155 || || || |||| || || || || || ||| | ||||| ||||||| Sbjct 65836 TTCGCGCAATCGAAACAATTCCTTGTGTGACGAAGAAAGCAGAATGGGCAATGAAATGGA 65895 Query 230156 TAGAAC--CTGGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTAT 230213 | ||| | ||| | || || ||| | |||| || | | || ||||||||||| Sbjct 65896 T-CAACGGATCTCAAAGC-TTCGCTGAGAGAATCGTAGCTTTTGCTTGCGTTGAAGGTAT 65953 Query 230214 TCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGG 230273 | || || || || || || | || || ||| || ||| |||| | |||||||| Sbjct 65954 ATTCTTCTCTGGTAGCTTTTGTTCGATATTCTGGTTGAAGAAACGAGGTTTAATGCCTGG 66013 Query 230274 CCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGA 230333 ||| | |||||||| || || | ||||| ||||| || | ||| || Sbjct 66014 ACTCACATTCTCTAACGAATTGATTTCGAGAGACGAAGGTCTTCACTGTGATTTC-GCTT 66072 Query 230334 GCTT-ATGTATTCAAAGCTCC--AGAAC-AAGCTACCATTCGAGACG-GTCAAACAAATC 230388 | || || ||| | || | ||||| ||||| | || ||| | ||| || Sbjct 66073 GTTTGATCTAT---AGTCTTCTTAGAACTAAGCTTGATGTAGA-ACGTTTGAAATCGATT 66128 Query 230389 ATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT 230448 || || || ||||| | ||| | ||||| |||| ||||| |||| ||| ||||| Sbjct 66129 GTTTGTGATGCGGTTGAGATCGAGAGAGAGTTTGTTTGCGACGCGCTTCCTTGT-GCCTT 66187 Query 230449 -ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTT 230507 |||| ||||| ||| | ||| | |||||||| || || || || || | | || Sbjct 66188 GGTTGGTATGAATCGTGATTTGATGAGTCAGTACATTGAGTTTGTTGCTGATAGGTTATT 66247 Query 230508 TGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAG-AACCCCTTTGCATTTATGGAGC 230566 ||| ||||| | | || ||||| | | || || || |||| | ||||| Sbjct 66248 GACTGCGCTTGGGTGTGGTAAGGTGTA-TGGTGTGAGTAATCCTTTTGATTGGATGGAAT 66306 Query 230567 TCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 | |||||||||||||| || || ||||| || || ||| | || |||| ||||||| Sbjct 66307 TGATTTCGCTTCAAGGTAAAACTAACTTTTTTGAGAAGAGAGTTGGTGAGTATCAGA 66363 >seq1397 Length=63135 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 41918 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 41977 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 41978 CCCCACGGTGGGC 41990 >seq1452 Length=1491187 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 591929 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 591988 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 591989 CCCACGGTGGGC 592000 >seq1378 Length=778246 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 425439 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 425380 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 425379 CCCACGGTGGGC 425368 >seq1175 Length=251127 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 61343 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 61402 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 61403 CCCACGGTGGGC 61414 >seq996 Length=1382858 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1361205 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1361146 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1361145 CCCACGGTGGGC 1361134 >seq895 Length=2238827 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1802652 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1802711 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1802712 CCCACGGTGGGC 1802723 >seq894 Length=3336090 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 185883 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 185942 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 185943 CCCACGGTGGGC 185954 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 864416 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 864475 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 864476 CCCACCGTGGGC 864487 >seq825 Length=633922 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 203639 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 203580 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 203579 CCCACGGTGGGC 203568 >seq799 Length=1830436 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 170109 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 170050 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 170049 CCCACGGTGGGC 170038 >seq791 Length=177479 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 51885 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 51944 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 51945 CCCACGGTGGGC 51956 >seq604 Length=1062050 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 576077 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 576136 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 576137 CCCACGGTGGGC 576148 >seq365 Length=1485341 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 468914 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 468973 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 468974 CCCACGGTGGGC 468985 >seq331 Length=1137320 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1069442 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1069383 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1069382 CCCACGGTGGGC 1069371 >seq22 Length=1040 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 510 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 569 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 570 CCCACGGTGGGC 581 >seq1206 Length=1516661 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||| | Sbjct 1348861 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 1348802 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1348801 CCCACGGTGGGC 1348790 >seq866 Length=976259 Score = 89.7 bits (98), Expect = 1e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 61373 AAGAGATTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGA 61432 |||||||||||||| ||| | ||| ||| | || || ||||||||||||||||| ||||| Sbjct 345479 AAGAGATTGGGGATTTGCAGGAGACTATGTGGAAGCAATGTGGTTGATGTTGCAGCAAGA 345538 Query 61433 TACTCCAGATGACTACGTTATTGCGAC 61459 | |||||||| |||||| |||| || Sbjct 345539 GAAGCCAGATGATTACGTTGTTGCAAC 345565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057793654004570