Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 131 2e-25
seq415 113 5e-20
>seq1432
Length=495105
Score = 131 bits (144), Expect = 2e-25
Identities = 564/875 (64%), Gaps = 24/875 (3%)
Strand=Plus/Minus
Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735
|| || || | ||| | || || |||||||||||||| || | || || || |||
Sbjct 66361 TGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAATTCC 66302
Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795
|| |||||||||||||| | | | | | ||| |||| || | | | |||
Sbjct 66301 ATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAATAAC 66242
Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855
||||| || ||||| || || || || | ||| || || | ||||| || | | | |
Sbjct 66241 CTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACGATTCATACCAACCA-AGGC 66183
Query 16856 ACC-GGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATAC- 16913
|| ||||| || || | ||| | ||| || ||||||| || || |||
Sbjct 66182 ACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGATCTCAACCGCATCACAAACAATCGA 66123
Query 16914 TAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAAT 16973
| ||| ||||| | | || | ||||| | || | |||| ||| |||||||
Sbjct 66122 TTTCAAA-CGTTCTACATCAAGCTTAGTTCTAAGAAGACTATAGATCAAACAAGCGAAAT 66064
Query 16974 CGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCT 17033
| || || | || |||||||| || | ||||||||| ||||| | || |||||
Sbjct 66063 CACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCATTA 66004
Query 17034 TTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGA 17093
||||||||||| ||||| ||||||| || ||||| ||||||||||| || |
Sbjct 66003 AACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTTCAA 65944
Query 17094 CGGATGCAAACGCGATTAATCGTTCGGCGTA-CGTCGCGTCTTTGTTACGAATCCATTTC 17152
|| | ||||| || | | || || ||| | | | | | | ||| |||||||||
Sbjct 65943 CGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAG-ATCCGTT---GATCCATTTC 65888
Query 17153 TGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAA----ATAA 17208
|||| || ||||| | | | | ||| || ||||| || || || || |
Sbjct 65887 ATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCGAAAGAGATGA 65828
Query 17209 TTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGA 17268
| ||||| || ||| ||| | || || || |||| || || || ||||| || ||
Sbjct 65827 TCTCTCTCTT---TGT-TGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGA 65772
Query 17269 GTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAAC 17328
|| || ||||| || || || || |||||||| ||| || ||||| | | |||||
Sbjct 65771 ATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGACCTGAAC 65712
Query 17329 TTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAA 17387
|| || | ||||||| | ||||| ||| ||||| ||||| |||||||| |
Sbjct 65711 ATCGGACAT-GAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGCGAAGA 65653
Query 17388 ACGCCAATATATGCTTAATGAAATATTTTTCGTC--CGGT--GTAAGAACGCGCCAGTCC 17443
| || | | || || ||||| | |||||| ||| || || | ||||||
Sbjct 65652 AGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTC-CCAGTCG 65594
Query 17444 TTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTA 17503
|||| || | ||| |||||||||| |||||| || || | || || ||
Sbjct 65593 CGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTCTTG 65534
Query 17504 TACATATTCCAAATATCATTGTATTGTATGGGGAA 17538
||||| | ||| || | |||||| || |||||
Sbjct 65533 TACATCTCCCAGATCTGTGGGTATTGGATTGGGAA 65499
>seq415
Length=609146
Score = 113 bits (124), Expect = 5e-20
Identities = 257/384 (67%), Gaps = 2/384 (1%)
Strand=Plus/Plus
Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735
|| ||||| | ||| ||||| || || ||||||||||| || | || || ||| |||
Sbjct 100134 TGATAATCACCAACACGTTTCTCAAAGAAGTTAGTTTTCCCTTGAAGCGAGATAAGTTCC 100193
Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795
|| ||||||| ||||||||||| | | || |||||| || | | | |
Sbjct 100194 ATCCAATCAAACGGATTAGTAGCACCGTACACCTTCCCGTACCCAAGCGCACCCAAAAGC 100253
Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855
|||||||| ||||| || ||||| || | ||| || || | |||||| || | | |||
Sbjct 100254 CTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCA-ACGC 100312
Query 16856 AC-CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACT 16914
| |||||| || || || ||| | ||| || | ||||| || || ||
Sbjct 100313 GCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAAACGATTGA 100372
Query 16915 AGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATC 16974
|| ||||| || | || ||| ||| | | | | ||||| ||||||||
Sbjct 100373 TTTCACGCGTTCTTCACTTAGCTTAGTTTTGAGAAGCGTGTAGAGAAGACAAGCGAAATC 100432
Query 16975 GCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTT 17034
||| |||| ||| ||||||| ||| | |||||| |||||||| | || |||||
Sbjct 100433 GCAGTGTAGTCCTTCGTCTCGAGAGATCAATTCGTTGGAAAATGTTAGTCCAGGCATGAG 100492
Query 17035 TCCTCGTTTCTTTAACCAAAATAT 17058
|||||||||||||| ||| || ||
Sbjct 100493 TCCTCGTTTCTTTAGCCAGAAGAT 100516
Score = 107 bits (118), Expect = 2e-18
Identities = 227/329 (69%), Gaps = 11/329 (3%)
Strand=Plus/Plus
Query 17085 TACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTC-GCG-TCTTTGTTACG 17142
|||| |||||| | || || ||||| | |||||||||| | || | | || | ||
Sbjct 100711 TACCTTCGACGCAAGCGAAAGCGATGATTCGTTCGGCGAAAGTTTGAGATCCAT----CG 100766
Query 17143 AATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT 17202
| |||||||| | |||||| ||||| | | | |||| |||||||| |||||
Sbjct 100767 A-TCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACG 100825
Query 17203 AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACAT 17262
||| | | ||| |||| | || | ||||||||||||| || || || |||||
Sbjct 100826 AAAGAGATGATCTCTTTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACAT 100885
Query 17263 TTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTA 17321
|| || || ||||| || || || ||||| || ||||| |||||| || || |||| |
Sbjct 100886 CTCCGAATGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCA-CGCGCCTCCGAGA 100944
Query 17322 TTTGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCG 17380
|||||| || || | |||||| || ||||| || ||||| |||||| |||
Sbjct 100945 CTTGAACATCGGACAT-GAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCG 101003
Query 17381 GCGAAAAACGCCAATATATGCTTAATGAA 17409
||||| || || | | ||| || |||||
Sbjct 101004 GCGAAGAAAGCGAGGACATGTTTGATGAA 101032
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517531115192520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |