Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1432 131 2e-25 seq415 113 5e-20 >seq1432 Length=495105 Score = 131 bits (144), Expect = 2e-25 Identities = 564/875 (64%), Gaps = 24/875 (3%) Strand=Plus/Minus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 || || || | ||| | || || |||||||||||||| || | || || || ||| Sbjct 66361 TGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAATTCC 66302 Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795 || |||||||||||||| | | | | | ||| |||| || | | | ||| Sbjct 66301 ATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAATAAC 66242 Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855 ||||| || ||||| || || || || | ||| || || | ||||| || | | | | Sbjct 66241 CTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACGATTCATACCAACCA-AGGC 66183 Query 16856 ACC-GGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATAC- 16913 || ||||| || || | ||| | ||| || ||||||| || || ||| Sbjct 66182 ACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGATCTCAACCGCATCACAAACAATCGA 66123 Query 16914 TAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAAT 16973 | ||| ||||| | | || | ||||| | || | |||| ||| ||||||| Sbjct 66122 TTTCAAA-CGTTCTACATCAAGCTTAGTTCTAAGAAGACTATAGATCAAACAAGCGAAAT 66064 Query 16974 CGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCT 17033 | || || | || |||||||| || | ||||||||| ||||| | || ||||| Sbjct 66063 CACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCATTA 66004 Query 17034 TTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGA 17093 ||||||||||| ||||| ||||||| || ||||| ||||||||||| || | Sbjct 66003 AACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTTCAA 65944 Query 17094 CGGATGCAAACGCGATTAATCGTTCGGCGTA-CGTCGCGTCTTTGTTACGAATCCATTTC 17152 || | ||||| || | | || || ||| | | | | | | ||| ||||||||| Sbjct 65943 CGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAG-ATCCGTT---GATCCATTTC 65888 Query 17153 TGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAA----ATAA 17208 |||| || ||||| | | | | ||| || ||||| || || || || | Sbjct 65887 ATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCGAAAGAGATGA 65828 Query 17209 TTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGA 17268 | ||||| || ||| ||| | || || || |||| || || || ||||| || || Sbjct 65827 TCTCTCTCTT---TGT-TGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGA 65772 Query 17269 GTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAAC 17328 || || ||||| || || || || |||||||| ||| || ||||| | | ||||| Sbjct 65771 ATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGACCTGAAC 65712 Query 17329 TTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAA 17387 || || | ||||||| | ||||| ||| ||||| ||||| |||||||| | Sbjct 65711 ATCGGACAT-GAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGCGAAGA 65653 Query 17388 ACGCCAATATATGCTTAATGAAATATTTTTCGTC--CGGT--GTAAGAACGCGCCAGTCC 17443 | || | | || || ||||| | |||||| ||| || || | |||||| Sbjct 65652 AGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTC-CCAGTCG 65594 Query 17444 TTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTA 17503 |||| || | ||| |||||||||| |||||| || || | || || || Sbjct 65593 CGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTCTTG 65534 Query 17504 TACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||||| | ||| || | |||||| || ||||| Sbjct 65533 TACATCTCCCAGATCTGTGGGTATTGGATTGGGAA 65499 >seq415 Length=609146 Score = 113 bits (124), Expect = 5e-20 Identities = 257/384 (67%), Gaps = 2/384 (1%) Strand=Plus/Plus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 || ||||| | ||| ||||| || || ||||||||||| || | || || ||| ||| Sbjct 100134 TGATAATCACCAACACGTTTCTCAAAGAAGTTAGTTTTCCCTTGAAGCGAGATAAGTTCC 100193 Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795 || ||||||| ||||||||||| | | || |||||| || | | | | Sbjct 100194 ATCCAATCAAACGGATTAGTAGCACCGTACACCTTCCCGTACCCAAGCGCACCCAAAAGC 100253 Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855 |||||||| ||||| || ||||| || | ||| || || | |||||| || | | ||| Sbjct 100254 CTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCA-ACGC 100312 Query 16856 AC-CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACT 16914 | |||||| || || || ||| | ||| || | ||||| || || || Sbjct 100313 GCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAAACGATTGA 100372 Query 16915 AGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATC 16974 || ||||| || | || ||| ||| | | | | ||||| |||||||| Sbjct 100373 TTTCACGCGTTCTTCACTTAGCTTAGTTTTGAGAAGCGTGTAGAGAAGACAAGCGAAATC 100432 Query 16975 GCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTT 17034 ||| |||| ||| ||||||| ||| | |||||| |||||||| | || ||||| Sbjct 100433 GCAGTGTAGTCCTTCGTCTCGAGAGATCAATTCGTTGGAAAATGTTAGTCCAGGCATGAG 100492 Query 17035 TCCTCGTTTCTTTAACCAAAATAT 17058 |||||||||||||| ||| || || Sbjct 100493 TCCTCGTTTCTTTAGCCAGAAGAT 100516 Score = 107 bits (118), Expect = 2e-18 Identities = 227/329 (69%), Gaps = 11/329 (3%) Strand=Plus/Plus Query 17085 TACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTC-GCG-TCTTTGTTACG 17142 |||| |||||| | || || ||||| | |||||||||| | || | | || | || Sbjct 100711 TACCTTCGACGCAAGCGAAAGCGATGATTCGTTCGGCGAAAGTTTGAGATCCAT----CG 100766 Query 17143 AATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT 17202 | |||||||| | |||||| ||||| | | | |||| |||||||| ||||| Sbjct 100767 A-TCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACG 100825 Query 17203 AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACAT 17262 ||| | | ||| |||| | || | ||||||||||||| || || || ||||| Sbjct 100826 AAAGAGATGATCTCTTTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACAT 100885 Query 17263 TTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTA 17321 || || || ||||| || || || ||||| || ||||| |||||| || || |||| | Sbjct 100886 CTCCGAATGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCA-CGCGCCTCCGAGA 100944 Query 17322 TTTGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCG 17380 |||||| || || | |||||| || ||||| || ||||| |||||| ||| Sbjct 100945 CTTGAACATCGGACAT-GAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCG 101003 Query 17381 GCGAAAAACGCCAATATATGCTTAATGAA 17409 ||||| || || | | ||| || ||||| Sbjct 101004 GCGAAGAAAGCGAGGACATGTTTGATGAA 101032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517531115192520