Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq415 131 2e-25
seq1432 114 1e-20
>seq415
Length=609146
Score = 131 bits (144), Expect = 2e-25
Identities = 288/426 (68%), Gaps = 12/426 (3%)
Strand=Plus/Plus
Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973
|| ||||||| ||| ||||| || |||||||||||||| || | | || ||| ||||
Sbjct 100134 TGATAATCACCAACACGTTTCTCAAAGAAGTTAGTTTTCCCTTGAAGCGAGATAAGTTCC 100193
Query 15974 ATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAAT 16033
|| ||||||| ||||||||||| | | ||| |||||| || || | | ||
Sbjct 100194 ATCCAATCAAACGGATTAGTAGCACCGTACACCTTCCCGTACCCAAG---CGCACCCAAA 100250
Query 16034 ---CTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-AAG 16089
||||| || ||||| || ||||| |||| ||| || || | || || || | ||
Sbjct 100251 AGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAAC 100310
Query 16090 TCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGAT 16149
|| || ||||| || | | ||| | | || || | ||||| || || |||
Sbjct 100311 GCGCAC-GGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAAACGAT 100369
Query 16150 ATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAG--GTGTTTAAACATTAGACACGCG 16207
| | ||| |||| | || || || | || || | | ||||| |||
Sbjct 100370 TGATTTCACGCGTTCTTCACTTAGCTTAGTTTTGAGAAGCGTGTAGAGA--AGACAAGCG 100427
Query 16208 AAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGC 16267
|| ||||| |||||||||||||||| ||| | |||||||||||| |||| || |||
Sbjct 100428 AAATCGCAGTGTAGTCCTTCGTCTCGAGAGATCAATTCGTTGGAAAATGTTAGTCCAGGC 100487
Query 16268 ATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCC 16327
|| |||||||||||||| |||||| || | | ||| || || ||||| |||||
Sbjct 100488 ATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACCT 100547
Query 16328 TCAACA 16333
||||||
Sbjct 100548 TCAACA 100553
>seq1432
Length=495105
Score = 114 bits (126), Expect = 1e-20
Identities = 241/358 (67%), Gaps = 11/358 (3%)
Strand=Plus/Minus
Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260
||| ||||| || || || || ||||||||||| || | |||||| || || || |
Sbjct 66074 ACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAG 66015
Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAA 16320
|| |||||| ||||||||||| ||||||||||||| | ||| || || |||||
Sbjct 66014 TCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAA 65955
Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG 16380
|||||| ||||| | |||||||| | | || || ||| | | | | ||
Sbjct 65954 TATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGTT--- 65898
Query 16381 AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT 16440
||||||||| | ||||||| ||||| | | | |||| || ||||| || ||
Sbjct 65897 GATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCG 65838
Query 16441 AAACA----ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496
||| | || ||||| ||| || || | || || || || | || | ||| |
Sbjct 65837 AAAGAGATGATCTCTCTCTTTGTTG----TCTTTGATGTAAGTGTCGAGAAGGAGACTAT 65782
Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554
|||| || || || || ||||| || || || || ||||| |||||| ||||| ||
Sbjct 65781 ACATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTC 65724
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511400086789480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |