Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq415 131 2e-25 seq1432 114 1e-20 >seq415 Length=609146 Score = 131 bits (144), Expect = 2e-25 Identities = 288/426 (68%), Gaps = 12/426 (3%) Strand=Plus/Plus Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973 || ||||||| ||| ||||| || |||||||||||||| || | | || ||| |||| Sbjct 100134 TGATAATCACCAACACGTTTCTCAAAGAAGTTAGTTTTCCCTTGAAGCGAGATAAGTTCC 100193 Query 15974 ATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAAT 16033 || ||||||| ||||||||||| | | ||| |||||| || || | | || Sbjct 100194 ATCCAATCAAACGGATTAGTAGCACCGTACACCTTCCCGTACCCAAG---CGCACCCAAA 100250 Query 16034 ---CTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-AAG 16089 ||||| || ||||| || ||||| |||| ||| || || | || || || | || Sbjct 100251 AGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAAC 100310 Query 16090 TCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGAT 16149 || || ||||| || | | ||| | | || || | ||||| || || ||| Sbjct 100311 GCGCAC-GGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAAACGAT 100369 Query 16150 ATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAG--GTGTTTAAACATTAGACACGCG 16207 | | ||| |||| | || || || | || || | | ||||| ||| Sbjct 100370 TGATTTCACGCGTTCTTCACTTAGCTTAGTTTTGAGAAGCGTGTAGAGA--AGACAAGCG 100427 Query 16208 AAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGC 16267 || ||||| |||||||||||||||| ||| | |||||||||||| |||| || ||| Sbjct 100428 AAATCGCAGTGTAGTCCTTCGTCTCGAGAGATCAATTCGTTGGAAAATGTTAGTCCAGGC 100487 Query 16268 ATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCC 16327 || |||||||||||||| |||||| || | | ||| || || ||||| ||||| Sbjct 100488 ATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACCT 100547 Query 16328 TCAACA 16333 |||||| Sbjct 100548 TCAACA 100553 >seq1432 Length=495105 Score = 114 bits (126), Expect = 1e-20 Identities = 241/358 (67%), Gaps = 11/358 (3%) Strand=Plus/Minus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||| ||||| || || || || ||||||||||| || | |||||| || || || | Sbjct 66074 ACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAG 66015 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAA 16320 || |||||| ||||||||||| ||||||||||||| | ||| || || ||||| Sbjct 66014 TCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAA 65955 Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG 16380 |||||| ||||| | |||||||| | | || || ||| | | | | || Sbjct 65954 TATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGTT--- 65898 Query 16381 AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT 16440 ||||||||| | ||||||| ||||| | | | |||| || ||||| || || Sbjct 65897 GATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCG 65838 Query 16441 AAACA----ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 ||| | || ||||| ||| || || | || || || || | || | ||| | Sbjct 65837 AAAGAGATGATCTCTCTCTTTGTTG----TCTTTGATGTAAGTGTCGAGAAGGAGACTAT 65782 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554 |||| || || || || ||||| || || || || ||||| |||||| ||||| || Sbjct 65781 ACATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTC 65724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511400086789480