Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq716 123 2e-23
seq1180 86.0 5e-12
>seq716
Length=321914
Score = 123 bits (136), Expect = 2e-23
Identities = 115/146 (79%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767
|||||||| || ||| ||||||||| || ||||| || |||| | || ||||| |||
Sbjct 10966 TGAGCATCCCCAATAACATGGATAAAGTCACCAGGGACAAGATCACACACGTGAGCCATC 11025
Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827
|||||||| | |||||| ||| |||||||||| ||||||| || | |||||||| |||
Sbjct 11026 ATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTATATGGCACACCAAGGCCCATATCCGCT 11085
Query 101828 GATCTTTGATACAGTTGACAGGAAAG 101853
|| | ||||||| |||||| || ||
Sbjct 11086 GAACGCTGATACATTTGACATGAGAG 11111
Score = 123 bits (136), Expect = 2e-23
Identities = 115/146 (79%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767
|||||||| || ||| ||||||||| || ||||| || |||| | || ||||| | |
Sbjct 17663 TGAGCATCCCCAATAACATGGATAAAATCACCAGGAACAAGATCACACACGTGAGCCAGC 17722
Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827
|||||||| | |||||| ||| |||||||||||||||||| || | |||||||| |||
Sbjct 17723 ATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAATGGCACACCAAGGCCCATATCCGCT 17782
Query 101828 GATCTTTGATACAGTTGACAGGAAAG 101853
|| | ||||||| |||||| || ||
Sbjct 17783 GAACGCTGATACATTTGACATGAGAG 17808
>seq1180
Length=4302264
Score = 86.0 bits (94), Expect = 5e-12
Identities = 142/204 (70%), Gaps = 6/204 (3%)
Strand=Plus/Minus
Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814
||| ||||| | ||||| || | ||| || || |||||||||||||| ||||| |
Sbjct 2204458 GACGTGAGCGAGAATGCATGTAAGAAGGGAGTATGATGCAATGTTAAATGGTACTCCGAG 2204399
Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAA 101874
|||||||| ||||| | ||||||| |||||| || || | |||||| ||||||||
Sbjct 2204398 ACCCATATCGGCTGAACGCTGATACATTTGACATGACAGTTCTCCATCTGCAACATAAAA 2204339
Query 101875 TTGACTTAATACATGACAAGGCGGCA---ACACCATTTTAGGAATGTCTGAAACATTCCA 101931
|| || | || || || || | || || ||| || || ||| ||||||
Sbjct 2204338 CTGTGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGA---TCAGAAGGATTCCA 2204282
Query 101932 AGCACACATTAACATCCTTCTATC 101955
||| |||||| |||| || |||
Sbjct 2204281 AGCCGACATTATAATCCGTCGATC 2204258
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361241342244989
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |