Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq716 123 2e-23 seq1180 86.0 5e-12 >seq716 Length=321914 Score = 123 bits (136), Expect = 2e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||||||| || ||| ||||||||| || ||||| || |||| | || ||||| ||| Sbjct 10966 TGAGCATCCCCAATAACATGGATAAAGTCACCAGGGACAAGATCACACACGTGAGCCATC 11025 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 |||||||| | |||||| ||| |||||||||| ||||||| || | |||||||| ||| Sbjct 11026 ATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTATATGGCACACCAAGGCCCATATCCGCT 11085 Query 101828 GATCTTTGATACAGTTGACAGGAAAG 101853 || | ||||||| |||||| || || Sbjct 11086 GAACGCTGATACATTTGACATGAGAG 11111 Score = 123 bits (136), Expect = 2e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||||||| || ||| ||||||||| || ||||| || |||| | || ||||| | | Sbjct 17663 TGAGCATCCCCAATAACATGGATAAAATCACCAGGAACAAGATCACACACGTGAGCCAGC 17722 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 |||||||| | |||||| ||| |||||||||||||||||| || | |||||||| ||| Sbjct 17723 ATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAATGGCACACCAAGGCCCATATCCGCT 17782 Query 101828 GATCTTTGATACAGTTGACAGGAAAG 101853 || | ||||||| |||||| || || Sbjct 17783 GAACGCTGATACATTTGACATGAGAG 17808 >seq1180 Length=4302264 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/204 (70%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 ||| ||||| | ||||| || | ||| || || |||||||||||||| ||||| | Sbjct 2204458 GACGTGAGCGAGAATGCATGTAAGAAGGGAGTATGATGCAATGTTAAATGGTACTCCGAG 2204399 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAA 101874 |||||||| ||||| | ||||||| |||||| || || | |||||| |||||||| Sbjct 2204398 ACCCATATCGGCTGAACGCTGATACATTTGACATGACAGTTCTCCATCTGCAACATAAAA 2204339 Query 101875 TTGACTTAATACATGACAAGGCGGCA---ACACCATTTTAGGAATGTCTGAAACATTCCA 101931 || || | || || || || | || || ||| || || ||| |||||| Sbjct 2204338 CTGTGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGA---TCAGAAGGATTCCA 2204282 Query 101932 AGCACACATTAACATCCTTCTATC 101955 ||| |||||| |||| || ||| Sbjct 2204281 AGCCGACATTATAATCCGTCGATC 2204258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361241342244989