Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 212 7e-50
seq415 140 4e-28
>seq1432
Length=495105
Score = 212 bits (234), Expect = 7e-50
Identities = 433/631 (69%), Gaps = 23/631 (4%)
Strand=Plus/Minus
Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188
|||||||| |||||||| ||||| ||||| |||||||| ||| |||||||| || ||
Sbjct 66079 ATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAAT 66020
Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 24247
|||||||| ||||||| || || || || | ||| ||||| || |||| | | |||||
Sbjct 66019 GTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGA 65961
Query 24248 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTC 24307
||||| || ||||| || ||||| || | | ||| || | | || ||
Sbjct 65960 GAAGAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA----GCTTTGAG 65905
Query 24308 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363
|| || ||||| || ||||| || || ||||| | |||||||| ||||| || |
Sbjct 65904 ATCCGTTGATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGA 65845
Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423
| || |||||||| | | | || || | ||||| | || || || | | ||||
Sbjct 65844 TTGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGAC 65785
Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483
||||||| || |||||||| || || || || ||||| ||||||||||| | ||| |
Sbjct 65784 TATACATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTT 65725
Query 24484 CGGTAATCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542
| | | ||| || || ||| |||||| || | ||| || || ||||||||
Sbjct 65724 CTGAGACCTGAACATC-GGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCT 65666
Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGT--GTTAG 24598
|| || || || || | || ||||| || || | |||||| |||| || ||
Sbjct 65665 GATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAG 65606
Query 24599 TTTATTCCAATC---ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 24655
||| | ||| || |||| |||| ||| | ||| |||||||| | ||||| || ||
Sbjct 65605 TTT-TCCCAGTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGA 65550
Query 24656 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715
|| || || || || ||||| | |||||| | | ||||| ||||| || ||| ||
Sbjct 65549 CGCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAA 65490
Query 24716 TCTATTTGGATTTTTTGCAAGGATTGGTTCC 24746
|| || ||| || || ||||||||||||
Sbjct 65489 TCGATCTGGTGTTGGTGTTAGGATTGGTTCC 65459
>seq415
Length=609146
Score = 140 bits (154), Expect = 4e-28
Identities = 278/406 (68%), Gaps = 7/406 (2%)
Strand=Plus/Plus
Query 24324 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 24383
||||| | || ||||| || ||||| || || || || ||| |||||||| | |
Sbjct 100779 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 100838
Query 24384 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 24443
|||| || ||||||| | ||| ||||| | | ||||||||||| |||||||| |||
Sbjct 100839 CTTTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATCTCCGAATGGATG 100898
Query 24444 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATA 24503
|||||||| || || || || ||||||||| | ||||| | | || || || |
Sbjct 100899 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC-GGA 100957
Query 24504 CA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 24562
|| ||||| || | ||| || || |||||||| || || || || || |
Sbjct 100958 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCGGCGAAGAAAGCGAG 101017
Query 24563 TACATGTTTTATAAA---ATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCATTGATAT 24618
|||||||| || || | || |||| | | | | |||| | ||| || | | |
Sbjct 101018 GACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTT-TCCCAGTCGCGGTTGT 101076
Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678
||| |||| ||| |||||||| | ||||| |||||||| || || ||||| ||||| |
Sbjct 101077 CTTGTGATAGATCTACTTCTTCAGCGGTCCAGAATGATGCTTCGGCTTTTTTGTACATTT 101136
Query 24679 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 24724
|||||| | | || |||||||| || ||| ||||| | |||
Sbjct 101137 CCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 101182
Score = 104 bits (114), Expect = 3e-17
Identities = 285/429 (66%), Gaps = 12/429 (3%)
Strand=Plus/Plus
Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902
||| || || ||||| |||||||| || || || |||||||| |||| | || |||
Sbjct 100130 TTTCTGATAATCACCAACACGTTTCTCAAAGAAGTTAGTTTTCCCTTGAAGCGAGATAAG 100189
Query 23903 TTCCATGAAATCGGATGGATTGGTAACATTATAGA--TTCTTTTAAATCCCAATT-CAGA 23959
|||||| |||| | ||||| ||| || || | ||| || ||||| ||
Sbjct 100190 TTCCATCCAATCAAACGGATTAGTAGCACCGTACACCTTCCCGTA---CCCAAGCGCACC 100246
Query 23960 AATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTAT 24019
| | ||||| || |||||||| ||||| |||||| |||| ||||| || |
Sbjct 100247 CAAAAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAAC 100306
Query 24020 -AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTA 24078
|| || ||||| || | | ||| ||| || || ||||||||| |
Sbjct 100307 CAACGCGCAC-GGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAAA 100365
Query 24079 TAATAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACA 24136
|| ||| | || ||||||||| | | | | | || || || | | | |||
Sbjct 100366 CGATTGATTTCACGCGTTCTTCACTTAGCTTAGTTTTGAGAAGCGTGTAGAGA--AGACA 100423
Query 24137 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 24196
||||||||||||||||| || ||||||| | || |||||||||||||| || |||||
Sbjct 100424 AGCGAAATCGCAGTGTAGTCCTTCGTCTCGAGAGATCAATTCGTTGGAAAATGTTAGTCC 100483
Query 24197 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 24256
||||| || || || || || ||||| || || || ||| ||| || ||||| ||
Sbjct 100484 AGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGAT 100543
Query 24257 TCCTTCTAC 24265
||||| ||
Sbjct 100544 ACCTTCAAC 100552
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593704983216720
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