Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq507 107 2e-18 seq530 98.7 9e-16 seq980 95.1 1e-14 seq713 95.1 1e-14 seq687 91.5 1e-13 seq1891 89.7 4e-13 seq788 89.7 4e-13 seq400 86.0 5e-12 >seq507 Length=413332 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | |||||| | || ||||| |||||||| ||| || | | Sbjct 378291 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 378350 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| ||| || || || |||||| | || || || Sbjct 378351 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 378410 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||||||||||||||| || ||||| || || ||| ||| ||||||||||||| Sbjct 378411 CAAAGACTTATCTTTGCTGGGAAACAGCTTGAGGATGGTCGTACTTTGGCCGATTACAAC 378470 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| ||||| ||||| ||| |||| | || ||| |||| || Sbjct 378471 ATCCAGAAAGAATCAACTCTCCACTTGGTTCTTCGTTTAAGAGGTGG 378517 >seq530 Length=553347 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| |||||||| || || |||||||| ||| ||| | | Sbjct 260214 ATGCAGATTTTTGTCAAGACATTGACAGGAAAGACCATTACTTTGGAAGTGGAGAGCTCT 260273 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | || || ||| || ||||| ||| | || || || Sbjct 260274 GACACCATCGACAATGTCAAAGCCAAGATTCAAGACAAAGAGGGTATTCCTCCGGACCAG 260333 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | ||||| || || || ||||| |||||| || |||| |||| |||||||| Sbjct 260334 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTTTGGCTGATTACAAC 260393 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| || ||||||||| |||| || || | || ||||| Sbjct 260394 ATTCAGAAGGAGTCCACTCTTCACTTGGTCTTGCGTCTCCGTGGAGG 260440 >seq980 Length=1630315 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | |||||| | || ||||| |||||||| ||| || | | Sbjct 3078 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 3019 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| ||| ||| ||||| |||||| | || ||| || Sbjct 3018 GACACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCAGACCAG 2959 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | ||||| || || ||||| || |||||| || |||| ||||||||| Sbjct 2958 CAGAGATTGATCTTCGCTGGTAAACAGCTAGAAGATGGTCGTACCTTGGCAGATTACAAT 2899 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||| || || || |||| | | ||| |||| || Sbjct 2898 ATCCAGAAGGAATCAACGCTACATTTGGTTCTCAGGTTAAGAGGTGG 2852 >seq713 Length=176098 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | |||||| | || ||||| |||||||| ||| || | | Sbjct 45302 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 45361 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| ||| ||| ||||| |||||| | || ||| || Sbjct 45362 GACACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCAGACCAG 45421 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | ||||| || || ||||| || |||||| || |||| ||||||||| Sbjct 45422 CAGAGATTGATCTTCGCTGGTAAACAGCTAGAAGATGGTCGTACCTTGGCAGATTACAAT 45481 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||| || || || |||| | | ||| |||| || Sbjct 45482 ATCCAGAAGGAATCAACGCTACATTTGGTTCTCAGGTTAAGAGGTGG 45528 >seq687 Length=897029 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || |||| || ||| ||||||||||||| || |||||||| || Sbjct 267707 GACAAAGAAGGGATTCCTCTAGACCAGCAACGACTTATCTTTGCCGGTAAACAACTCGAG 267766 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGG 29169 ||| | ||| |||| |||||||||||||| ||||| || | ||| ||| ||| Sbjct 267767 GATGGCCGTACTTTGGCTGATTACAATATTCAAAAGGAGTCAATTCTCCACTTGG 267821 >seq1891 Length=27579 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | |||||| | || ||||| |||||||| ||| || | | Sbjct 11643 ATGCAAATTTTCGTGAAAACACTTACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 11584 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| ||| ||| ||||| |||||| | || || || Sbjct 11583 GACACCATTGACAATGTCAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCGGACCAG 11524 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | ||||| || || ||||| ||||| ||| || |||||||||||||| Sbjct 11523 CAGAGATTGATCTTCGCCGGTAAACAGCTGGAGGATGGTCGTACCTTGGCCGATTACAAT 11464 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||| || || || |||| | | ||| |||| || Sbjct 11463 ATCCAGAAGGAATCAACACTCCATTTGGTTCTCAGGTTAAGAGGTGG 11417 >seq788 Length=1574065 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||| ||| | || || || || ||| | ||||| || || || ||||| ||| Sbjct 693213 GACAAAGAGGGTATCCCACCGGACCAGCAGAGATTGATCTTCGCCGGAAAGCAACTTGAA 693272 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| || |||| |||| || ||||| ||||||||||| ||||| |||||| |||| || Sbjct 693273 GATGGCAGAACTTTGGCTGACTACAACATTCAGAAGGAGTCTACACTTCACTTGGTCTTG 693332 Query 29175 CGATTACGAGGAGG 29188 || | || ||||| Sbjct 693333 CGTCTGCGTGGAGG 693346 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||| ||| | || || || || || | ||||| || || || ||||| ||| Sbjct 100682 GACAAAGAGGGTATTCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAGCAACTTGAA 100741 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || |||| |||| || ||||| ||||||||||| ||||| ||||| |||||||| Sbjct 100742 GACGGCAGAACTTTGGCTGACTACAACATTCAGAAGGAGTCTACCCTTCATTTGGTGTTA 100801 Query 29175 CGATTACGAGGAGG 29188 || | || ||||| Sbjct 100802 CGTCTGCGTGGAGG 100815 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||| ||| | || || || || || | ||||| || || || ||||| ||| Sbjct 108118 GACAAAGAGGGTATTCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAGCAACTTGAA 108177 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || |||| |||| || ||||| ||||||||||| ||||| ||||| |||||||| Sbjct 108178 GACGGCAGAACTTTGGCTGACTACAACATTCAGAAGGAGTCTACCCTTCATTTGGTGTTA 108237 Query 29175 CGATTACGAGGAGG 29188 || | || ||||| Sbjct 108238 CGTCTGCGTGGAGG 108251 >seq400 Length=13612 Score = 86.0 bits (94), Expect = 5e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 ||| ||||| ||||| ||||| || || ||||| || || ||| ||| |||| || Sbjct 1476 AGACCAACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGGACTTTGGCTGA 1417 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 |||||| || ||||||||||||||||||||| | ||||| || Sbjct 1416 TTACAACATCCAGAAGGAATCTACTCTTCACCTTGTGTTGCG 1375 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | |||||| | || ||||| ||||| || ||| || | | Sbjct 2273 ATGCAAATCTTTGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 2214 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| ||| ||| || || ||||| | || || || Sbjct 2213 GACACCATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGACCAG 2154 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | ||||| || || ||||| || |||||| | || |||||||||||||| Sbjct 2153 CAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACAAT 2094 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| ||||| || || ||| |||| | || ||| |||| || Sbjct 2093 ATCCAGAAAGAATCAACCCTCCACTTGGTTCTCCGTTTAAGAGGTGG 2047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428324311647545