Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq507 95.1 1e-14
seq687 91.5 1e-13
seq1891 86.0 5e-12
>seq507
Length=413332
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
|||||||| ||| | |||||| | || ||||| |||||||| ||| || | |
Sbjct 378291 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 378350
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | | || | ||| ||| || || || |||||| | || || ||
Sbjct 378351 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 378410
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
||||||||||||||||| || ||||| | || ||| ||| |||||||||||||
Sbjct 378411 CAAAGACTTATCTTTGCTGGGAAACAGCTTGAGGATGGTCGTACTTTGGCCGATTACAAC 378470
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261
|| || || ||||| ||||| ||| |||| | || ||| |||| ||
Sbjct 378471 ATCCAGAAAGAATCAACTCTCCACTTGGTTCTTCGTTTAAGAGGTGG 378517
>seq687
Length=897029
Score = 91.5 bits (100), Expect = 1e-13
Identities = 89/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
|| |||||||| | || |||| || ||| ||||||||||||| || |||||| | ||
Sbjct 267707 GACAAAGAAGGGATTCCTCTAGACCAGCAACGACTTATCTTTGCCGGTAAACAACTCGAG 267766
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGG 25242
||| | ||| |||| |||||||||||||||||||| || | ||| ||| |||
Sbjct 267767 GATGGCCGTACTTTGGCTGATTACAATATTCAAAAGGAGTCAATTCTCCACTTGG 267821
>seq1891
Length=27579
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
|||||||| ||| | |||||| | || ||||| |||||||| ||| || | |
Sbjct 11643 ATGCAAATTTTCGTGAAAACACTTACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 11584
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | | || ||||| ||| ||| ||||| |||||| | || || ||
Sbjct 11583 GACACCATTGACAATGTCAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCGGACCAG 11524
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
|| ||| | ||||| || || ||||| |||| ||| || ||||||||||||||
Sbjct 11523 CAGAGATTGATCTTCGCCGGTAAACAGCTGGAGGATGGTCGTACCTTGGCCGATTACAAT 11464
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261
|| || |||||||| || || || |||| | | ||| |||| ||
Sbjct 11463 ATCCAGAAGGAATCAACACTCCATTTGGTTCTCAGGTTAAGAGGTGG 11417
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410785590253946
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |