Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq507 95.1 1e-14 seq687 91.5 1e-13 seq1891 86.0 5e-12 >seq507 Length=413332 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | |||||| | || ||||| |||||||| ||| || | | Sbjct 378291 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 378350 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| ||| || || || |||||| | || || || Sbjct 378351 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 378410 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||||||||||||||| || ||||| | || ||| ||| ||||||||||||| Sbjct 378411 CAAAGACTTATCTTTGCTGGGAAACAGCTTGAGGATGGTCGTACTTTGGCCGATTACAAC 378470 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || || ||||| ||||| ||| |||| | || ||| |||| || Sbjct 378471 ATCCAGAAAGAATCAACTCTCCACTTGGTTCTTCGTTTAAGAGGTGG 378517 >seq687 Length=897029 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | || |||| || ||| ||||||||||||| || |||||| | || Sbjct 267707 GACAAAGAAGGGATTCCTCTAGACCAGCAACGACTTATCTTTGCCGGTAAACAACTCGAG 267766 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGG 25242 ||| | ||| |||| |||||||||||||||||||| || | ||| ||| ||| Sbjct 267767 GATGGCCGTACTTTGGCTGATTACAATATTCAAAAGGAGTCAATTCTCCACTTGG 267821 >seq1891 Length=27579 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | |||||| | || ||||| |||||||| ||| || | | Sbjct 11643 ATGCAAATTTTCGTGAAAACACTTACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 11584 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || ||||| ||| ||| ||||| |||||| | || || || Sbjct 11583 GACACCATTGACAATGTCAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCGGACCAG 11524 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||| | ||||| || || ||||| |||| ||| || |||||||||||||| Sbjct 11523 CAGAGATTGATCTTCGCCGGTAAACAGCTGGAGGATGGTCGTACCTTGGCCGATTACAAT 11464 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || |||||||| || || || |||| | | ||| |||| || Sbjct 11463 ATCCAGAAGGAATCAACACTCCATTTGGTTCTCAGGTTAAGAGGTGG 11417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410785590253946