Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq716 100 2e-16 >seq716 Length=321914 Score = 100 bits (110), Expect = 2e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 97072 TGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATC 97131 |||||||| || | | || ||||| || |||||||| | |||| || || || | | Sbjct 17663 TGAGCATCCCCAATAACATGGATAAAATCACCAGGAACAAGATCACACACGTGAGCCAGC 17722 Query 97132 ATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCT 97191 || ||||| | ||||| ||| |||||||||||| ||||| || || |||||||| ||| Sbjct 17723 ATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAATGGCACACCAAGGCCCATATCCGCT 17782 Query 97192 GATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTG 97241 || | ||||| | ||||| || || | || || |||||| ||||| Sbjct 17783 GAACGCTGATACATTTGACATGAGAGTTCCCCTTCTGCCACATAGAACTG 17832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346774537023230