Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1013 95.1 2e-14 seq1780 93.3 6e-14 seq443 91.5 2e-13 seq530 89.7 8e-13 seq912 86.0 9e-12 >seq1013 Length=1118043 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| || | || |||||||| | || |||||||| || || ||||| | Sbjct 384609 CCTCCTCTCAGACGTAGCACCAAATGAAGCGTCGATTCTTTCTGGATGTTGTAATCAGCG 384668 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | || || ||||||||||| || || ||||| | |||||||||||| || Sbjct 384669 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGGG 384728 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 384729 ATTCCTTCCTTGTCTTG 384745 >seq1780 Length=424430 Score = 93.3 bits (102), Expect = 6e-14 Identities = 152/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | || | ||| | ||| |||||||| || || ||||||| | Sbjct 97458 CCACCTCTCAGACGAAGCACGAGATGGAGAGTTGATTCTTTTTGGATGTTGTAATCTGCA 97517 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | ||| || | ||||| ||||| || || | ||| || ||||||||||| Sbjct 97518 AGCGTTCGACCATCCTCGAGCTGTTTACCAGCGAAGATTAGTCTCTGTTGATCCGGAGGG 97577 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| || ||||| || |||||||| || ||| Sbjct 97578 ATTCCTTCCTTGTCTTGGATCTTAGCTTTAACGTTGTCAATGGTGTCTGAACTCTCGACT 97637 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| || || |||||||| || | || || | |||||| ||||| Sbjct 97638 TCTAGGGTAATGGTTTTACCGGTAAGCGTCTTGACGAATATCTGCAT 97684 >seq443 Length=3098630 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||||||||| || || || || | ||| | |||||| ||||| || || ||||| Sbjct 1849597 GTTCCACCTCTGAGCCTCAAGACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCG 1849538 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | || | || ||| || ||||| || ||||||||||||| ||||| ||||| || Sbjct 1849537 GCTAAGGTCCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGTTGATCAGGT 1849478 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| || ||||| || || Sbjct 1849477 GGAATACCCTCTTTGTCCTG 1849458 >seq530 Length=553347 Score = 89.7 bits (98), Expect = 8e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || || || || | ||||||||| | ||| || || |||||||| || || |||||||| Sbjct 260167 ATGTTGTAGTCAGCAAGAGTTCTACCATCCTCCAACTGTTTTCCGGCGAAGATCAATCTC 260108 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||||||||||| || || |||||||| Sbjct 260107 TGCTGATCCGGAGGAATACCCTCCTTATCTTG 260076 >seq912 Length=1276171 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | |||||||| | || |||||||| ||||| ||||| | Sbjct 751156 CCACCTCTTAACCGGAGAACCAAATGGAGTGTTGATTCTTTCTGGATATTGTAATCAGCC 751097 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | || ||| |||| || || ||||| || |||||||||||||| ||||||||| Sbjct 751096 AAGGTACGGCCATCTTCTAGCTGCTTACCAGCGAAGATCAATCTTTGCTGGTCCGGAGGA 751037 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 751036 ATACCTTCCTTGTCCTG 751020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743505590554880