Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq1013 95.1 2e-14
seq1780 93.3 6e-14
seq443 91.5 2e-13
seq530 89.7 8e-13
seq912 86.0 9e-12
>seq1013
Length=1118043
Score = 95.1 bits (104), Expect = 2e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| ||||| || | || |||||||| | || |||||||| || || ||||| |
Sbjct 384609 CCTCCTCTCAGACGTAGCACCAAATGAAGCGTCGATTCTTTCTGGATGTTGTAATCAGCG 384668
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| ||||| | || || ||||||||||| || || ||||| | |||||||||||| ||
Sbjct 384669 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGGG 384728
Query 146171 ATTCCTTCTTTATCTTG 146187
|||||||| || |||||
Sbjct 384729 ATTCCTTCCTTGTCTTG 384745
>seq1780
Length=424430
Score = 93.3 bits (102), Expect = 6e-14
Identities = 152/227 (67%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| || | | || | ||| | ||| |||||||| || || ||||||| |
Sbjct 97458 CCACCTCTCAGACGAAGCACGAGATGGAGAGTTGATTCTTTTTGGATGTTGTAATCTGCA 97517
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| |||| | ||| || | ||||| ||||| || || | ||| || |||||||||||
Sbjct 97518 AGCGTTCGACCATCCTCGAGCTGTTTACCAGCGAAGATTAGTCTCTGTTGATCCGGAGGG 97577
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|||||||| || ||||| || |||||||| || |||
Sbjct 97578 ATTCCTTCCTTGTCTTGGATCTTAGCTTTAACGTTGTCAATGGTGTCTGAACTCTCGACT 97637
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
||||| || || |||||||| || | || || | |||||| |||||
Sbjct 97638 TCTAGGGTAATGGTTTTACCGGTAAGCGTCTTGACGAATATCTGCAT 97684
>seq443
Length=3098630
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107
||||||||||| || || || || | ||| | |||||| ||||| || || |||||
Sbjct 1849597 GTTCCACCTCTGAGCCTCAAGACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCG 1849538
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
| | || | || ||| || ||||| || ||||||||||||| ||||| ||||| ||
Sbjct 1849537 GCTAAGGTCCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGTTGATCAGGT 1849478
Query 146168 GGAATTCCTTCTTTATCTTG 146187
||||| || ||||| || ||
Sbjct 1849477 GGAATACCCTCTTTGTCCTG 1849458
>seq530
Length=553347
Score = 89.7 bits (98), Expect = 8e-13
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155
|| || || || | ||||||||| | ||| || || |||||||| || || ||||||||
Sbjct 260167 ATGTTGTAGTCAGCAAGAGTTCTACCATCCTCCAACTGTTTTCCGGCGAAGATCAATCTC 260108
Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
||||||||||||||||| || || ||||||||
Sbjct 260107 TGCTGATCCGGAGGAATACCCTCCTTATCTTG 260076
>seq912
Length=1276171
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | | | |||||||| | || |||||||| ||||| ||||| |
Sbjct 751156 CCACCTCTTAACCGGAGAACCAAATGGAGTGTTGATTCTTTCTGGATATTGTAATCAGCC 751097
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| || | || ||| |||| || || ||||| || |||||||||||||| |||||||||
Sbjct 751096 AAGGTACGGCCATCTTCTAGCTGCTTACCAGCGAAGATCAATCTTTGCTGGTCCGGAGGA 751037
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||| || || ||
Sbjct 751036 ATACCTTCCTTGTCCTG 751020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743505590554880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |