Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq895 111 1e-19 seq788 96.9 2e-15 seq530 91.5 1e-13 seq1206 87.8 1e-12 seq912 87.8 1e-12 seq400 87.8 1e-12 seq1311 82.4 5e-11 seq980 82.4 5e-11 >seq895 Length=2238827 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||| || |||| |||| |||| ||| || || |||||| Sbjct 1033427 TCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAAA 1033486 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || | ||||||||||| || | | |||||||| ||| || ||||| | || Sbjct 1033487 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATC-TTCGCTTTCACATT 1033545 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | ||||| |||||| || || | || ||||| || || || || |||||||| Sbjct 1033546 GTCGATGGTATCGGACGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCAC 1033605 Query 34378 AAAGATCTGCATC 34390 |||||||||||| Sbjct 1033606 GAAGATCTGCATC 1033618 >seq788 Length=1574065 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 || ||||| ||||||||||| | || | || ||| | || |||| ||||||||| ||||| Sbjct 693538 TCCTTCTGGATGTTGTAGTCAGCCAAGGTG-CGGCCATCCTCCAGCTGCTTGCCGGCGAA 693480 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || | || ||||||||| || | || ||||| || ||||| ||| | | Sbjct 693479 GATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTT 693420 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | ||| | || || |||| |||||||| || ||||||||||| ||||| Sbjct 693419 GTCAATGGTATCAGAGCTCTCTACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTCAC 693360 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 693359 GAAGATCTGCAT 693348 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| ||||||| ||| | |||| || ||||| ||||||||||| | | Sbjct 108707 CCACCACGAAGCCTTAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCC 108648 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || || | ||| || || ||||| ||||| ||||||||||| || Sbjct 108647 AAAGTACGCCCATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 108588 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | | || | || | ||||| Sbjct 108587 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCGACT 108528 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| || | ||| || || ||||||||||| Sbjct 108527 TCAAGAGTGATCGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 108481 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| ||||||| ||| | || || ||||| ||||||||||| | Sbjct 693802 CCACCACGAAGCCTTAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCT 693743 Query 34223 A-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 | | || ||| | || || | ||| || || ||||| ||||| ||||||||||| || Sbjct 693742 AAGGTG-CGGCCATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 693684 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| ||||| ||| | || | | || | || | || || Sbjct 693683 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCAC 693624 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || ||||| | ||| || |||||||||||||| Sbjct 693623 TTCAAGGGTGATGGTCTTACCGGTCAAAGTCTTGACAAAGATCTGCAT 693576 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||| || ||| | || || | |||||| || ||||| Sbjct 693994 TCCTTCTGGATGTTGTAGTCGGCCAAAGTACGACCATCCTCGAGCTGCTTTCCAGCGAAG 693935 Query 34259 ATGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGAT 34316 ||||| ||||||||||| || || || || ||||| || ||||| ||||| | Sbjct 693934 ATGAGACGCTGCTGGTCCGGAGGGATAC-CT-TCCTTATCCTGGATCTTGGCCTTTACGT 693877 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | || | |||| || || |||| ||||| || || ||||| ||||| |||| Sbjct 693876 TGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATAGTCTTCCCGGTCAGAGTCTTCA 693817 Query 34377 CAAAGATCTGCAT 34389 | || |||||||| Sbjct 693816 CGAAAATCTGCAT 693804 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 || || || || || | || |||| ||| | |||| || ||||| ||||||||||| Sbjct 101274 AAACCACCACGGAGACGGAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCA 101215 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GA 34277 | || ||| | || || | |||||| || ||||| ||||| ||||||||||| || Sbjct 101214 GCCAAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGA 101155 Query 34278 CGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATT 34337 || || || |||||||| ||||| ||| | | | | || | |||| | Sbjct 101154 GGGATAC-CT-TCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCT 101097 Query 34338 CGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || || | |||||||| || ||||| | ||| ||||| || |||||||| Sbjct 101096 CCACTTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATCTGCAT 101045 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || |||| ||| | || ||| ||||| |||||||| || | | Sbjct 692890 CCACCACGGAGCCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCC 692831 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | ||| | || || | |||||| || ||||| || |||| |||||| || || Sbjct 692830 AACGTGCGGCCATCCTCTAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGA 692771 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | | || | || | ||| || Sbjct 692770 ATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGCTTTCCACC 692711 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || ||||| ||||| || || |||||||||||| Sbjct 692710 TCAAGGGTGATAGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCATC 692663 >seq530 Length=553347 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || || || || | || |||| ||| | |||| || ||||| ||||||||||| Sbjct 260672 GAAACCACCACGGAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 260613 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--G 34276 | || || | || || | |||||| || ||||| ||||| ||||||||||| | Sbjct 260612 AGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGG 260553 Query 34277 ACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGAT 34336 | || || || |||||||| ||||| ||| | | | | || | || | Sbjct 260552 AGGGATAC-CT-TCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCAGAGCTC 260495 Query 34337 TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || |||| ||||| || || || |||||||| ||||||||||||||||| Sbjct 260494 TCTACCTCCAAGGTGATAGTCTTTCCAGTGAGAGTCTTCACAAAGATCTGCAT 260442 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || |||| ||| | || ||| ||||| || ||||| || | | Sbjct 259984 CCACCACGGAGCCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAATCAGCC 259925 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | || | || |||||||| || || |||||||| |||| |||||| || || Sbjct 259924 AACGTGCGACCATCCTCCAACTGTTTTCCGGCGAAAATAAGCCTCTGCTGATCCGGAGGA 259865 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | | || | || | ||| || Sbjct 259864 ATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGCTTTCCACC 259805 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || ||||||||||| || || |||||||||||| Sbjct 259804 TCGAGGGTGATAGTCTTACCGGTGAGAGTCTTAACGAAGATCTGCATC 259757 >seq1206 Length=1516661 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||| |||| | ||| |||| || | |||||| || ||||| Sbjct 451406 TTCCTTCTGGATGTTGTAATCGGCTAAGGTACGTCCGTCTTCGAGCTGCTTTCCGGCGAA 451465 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||| | ||||||||||| || | | |||||||| ||||| ||| | || Sbjct 451466 AATCAATCGCTGCTGGTCCGGTGGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATT 451525 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | || | || ||||| || | ||||| || || || || || |||||||| Sbjct 451526 GTCGATGGTGTCAGAGGACTCGACCTCAAGAGTGATCGTCTTCCCCGTTAGGGTTTTCAC 451585 Query 34378 AAAGATCTGCATC 34390 |||||||||||| Sbjct 451586 GAAGATCTGCATC 451598 >seq912 Length=1276171 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| | || | |||| || | |||||| || |||||| Sbjct 751348 TCCTTCTGGATGTTGTAGTCAGCAAGAGTCCTTCCGTCCTCAAGCTGCTTACCAGCGAAA 751289 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| ||||||||| || | | |||||||| |||||| ||| | | | Sbjct 751288 ATAAGCCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGAATCTTTGCCTTGACGTTG 751229 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | ||| || || | |||||||||||||| || ||||| || ||| Sbjct 751228 TCAATAGTGTCAGAACTTTCAACCTCAAGGGTGATGGTTTTGCCAGTCAGAGTCTTGACA 751169 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 751168 AAGATCTGCAT 751158 >seq400 Length=13612 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| || ||||| |||| || |||| | || || | ||| || || ||||| Sbjct 2082 TTCTTTCTGGATATTGTAATCGGCCAAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAA 2141 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || | | ||||||||| || | || |||||||| |||||| ||| | || Sbjct 2142 GATTAATCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTAACATT 2201 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | || | || || || | |||||||| ||||| ||||| |||||||| Sbjct 2202 GTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCAC 2261 Query 34378 AAAGATCTGCATC 34390 |||||| |||||| Sbjct 2262 AAAGATTTGCATC 2274 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || ||| ||||| | |||| ||| ||||| |||||||| || | | Sbjct 1363 CCACCACGCAGACGCAACACAAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGCC 1422 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 | || | || || | ||| || || ||||| ||||| | ||| ||||| | ||| Sbjct 1423 AAAGTCCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGG 1482 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC---GAT-T 34337 | || |||||||| ||||| ||| | || |||| | | ||| | | | Sbjct 1483 ATCCCT-TCCTTGTCCTGAATCTTAGCCTTGACAT----TATCAATTGTGTCTGAGCTCT 1537 Query 34338 CGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || |||| || ||||| |||||||| || || ||||||||||||||||| Sbjct 1538 CCACCTCCAAAGTTATGGTCTTGCCGGTAAGGGTCTTCACAAAGATCTGCAT 1589 >seq1311 Length=673479 Score = 82.4 bits (90), Expect = 5e-11 Identities = 164/235 (70%), Gaps = 16/235 (7%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG-- 34220 || || ||||| | || ||| ||||| | ||| ||| ||||| |||||||| || | Sbjct 80059 CCACCACGCAGACGCAACACAAGGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCAGCT 80000 Query 34221 ACAG-CTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GAC 34278 | || | ||| | || || | ||| || || ||||| ||||| | ||| ||||| | Sbjct 79999 AAAGTCCGAC---CATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCTGGT 79943 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC---GA 34335 ||| | || |||||||| ||||| ||| | || |||||| | ||| | Sbjct 79942 GGGATCCCT-TCCTTGTCCTGAATCTTAGCCTTGACAT----TATCGATTGTGTCTGAGC 79888 Query 34336 T-TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || || |||| || ||||| |||||||| || || ||||||||||||||||| Sbjct 79887 TCTCCACCTCCAAAGTTATGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCAT 79833 >seq980 Length=1630315 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || ||| ||||| | ||| ||| ||||| |||||||| || | | Sbjct 2168 CCACCACGAAGACGCAACACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGCC 2227 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || | || || | ||| || || ||||| ||||||| ||| ||||| || Sbjct 2228 AAAGTCCGTCCATCCTCAAGCTGTTTCCCAGCGAAGATGAGCCTCTGTTGGTCTGGTGGA 2287 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC---GAT-TC 34338 | | ||| ||||| ||||| ||| | || |||||| | ||| | | || Sbjct 2288 ATCCCCTCTTTGTCCTGAATCTTAGCCTTGACAT----TATCGATTGTGTCTGAGCTCTC 2343 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| || |||||||| ||||| || || ||||||||||||||||| Sbjct 2344 AACCTCCAGAGTAATGGTTTTCCCGGTAAGGGTCTTCACAAAGATCTGCAT 2394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323063184071840