Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 210 2e-49
seq415 123 2e-23
>seq1432
Length=495105
Score = 210 bits (232), Expect = 2e-49
Identities = 572/867 (66%), Gaps = 14/867 (2%)
Strand=Plus/Minus
Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988
|||||||| || ||| ||||| |||| ||||||||| ||||| || || ||||| |||
Sbjct 66379 GACATAACAGAAGCTTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCT 66320
Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048
| | ||||| |||||| ||||||||||||| | || ||| ||| | ||
Sbjct 66319 TGAAGCGAAATCAATTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACA- 66261
Query 16049 CCCAATTCCAA-CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACA 16107
||||| || |||||| ||||| || ||||| || || ||||| |||| |||||||
Sbjct 66260 CCCAAGCGCAGTCAATAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACG 66201
Query 16108 GTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167
||||| || | || | ||| | || || | ||| | | | || || | |||
Sbjct 66200 ATTCATACCAACCAAGGCACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGATCTCAAC 66141
Query 16168 CGCTTCAATGATTAT--ATCTCTTACTACACTATTTAACGGAGGGTT-TAATAAGTGTTT 16224
||| ||| | || || || || ||| | | | ||| ||| ||| | |
Sbjct 66140 CGCATCACAAACAATCGATTTCAAACGTT-CTACATCAAGCTTAGTTCTAAGAAGACTAT 66082
Query 16225 AAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGA 16284
| | | | |||||| |||||||| || | |||||||| || || || ||||| ||
Sbjct 66081 AGA--TCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGA 66024
Query 16285 AAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACC 16344
||||| || || ||||||| |||||||| || | ||| ||||| | ||| |||
Sbjct 66023 GAATGTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACC 65964
Query 16345 AGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtt 16404
||| ||||||||||||||||| ||||| || || | || |||| || | || |
Sbjct 65963 AGAGAAGAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGA 65904
Query 16405 tttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTC 16464
| | | |||||||| | ||||| | |||||| | | ||||| || | ||
Sbjct 65903 T---CCGTTGATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTC 65847
Query 16465 TATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAA 16524
||||| ||| | || || | | |||||| | ||| || ||||| || | || |
Sbjct 65846 GATTGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAG 65787
Query 16525 ACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGC 16584
||||||||| || |||||||||||||| ||||| || || || || || ||| | |||
Sbjct 65786 ACTATACATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGC 65727
Query 16585 TTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATC 16644
||| || | || || || || || | | || | || ||| ||| ||||| ||
Sbjct 65726 TTCTGAGACCTGAACATCGGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTC 65667
Query 16645 GCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGT-- 16702
|| || || || || || | |||||| || || | ||||| | | |||
Sbjct 65666 TGATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGA 65607
Query 16703 -TTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGC 16761
||| |||||| | |||| || | |||||| ||||| | ||||| || || ||
Sbjct 65606 GTTTTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGC 65547
Query 16762 AACAGCCTTTTTATACATTTTCCATAT 16788
| || || || ||||| | ||| ||
Sbjct 65546 TTCGGCTTTCTTGTACATCTCCCAGAT 65520
>seq415
Length=609146
Score = 123 bits (136), Expect = 2e-23
Identities = 299/444 (67%), Gaps = 14/444 (3%)
Strand=Plus/Plus
Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988
|||||||| || ||| ||||| |||| ||| | || |||||||| || ||||| |||
Sbjct 100116 GACATAACGGAAGCTTTCTGATAATCACCAACACGTTTCTCAAAGAAGTTAGTTTTCCCT 100175
Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048
| | || ||| |||||| ||||||| ||||| | | || || || || |
Sbjct 100176 TGAAGCGAGATAAGTTCCATCCAATCAAACGGATTAGTAGCACCGTACACCTTCCCGTA- 100234
Query 16049 CCCAATTCCAACAATAATC-TATCCGCCACAAATTCTATATACTGTTTCATTAAATCACA 16107
||||| || | | || | ||||||| ||||| || |||||||| |||| |||||||
Sbjct 100235 CCCAAGCGCACCCAAAAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACG 100294
Query 16108 GTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167
|||||| || | || || | || || | ||| | | | || || | ||
Sbjct 100295 GTTCATCCCAACCAACGCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGAC 100354
Query 16168 CGCTTC---AATGATT-ATATCTCT--TACTACACTATTTAACGGAGGGTTTAATAAGTG 16221
||| || || |||| || || | | || |||| || | || ||| | ||| |
Sbjct 100355 CGCGTCGCAAACGATTGATTTCACGCGTTCTTCACT---TAGCTTAGT-TTTGAGAAGCG 100410
Query 16222 TTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTT 16281
| || | | | |||||| ||||| || || | ||||||||| | | || || |||||
Sbjct 100411 TGTAGAGA--AGACAAGCGAAATCGCAGTGTAGTCCTTCGTCTCGAGAGATCAATTCGTT 100468
Query 16282 TGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGA 16341
|||||||| || || ||||| ||||||||||| || | ||| || || | |||
Sbjct 100469 GGAAAATGTTAGTCCAGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCT 100528
Query 16342 ACCAGAAAAGAATATACCTTCAAC 16365
|| || ||||| |||||||||||
Sbjct 100529 TCCGGAGAAGAAGATACCTTCAAC 100552
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462499055445400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |