Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1432 210 2e-49 seq415 123 2e-23 >seq1432 Length=495105 Score = 210 bits (232), Expect = 2e-49 Identities = 572/867 (66%), Gaps = 14/867 (2%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||||||| || ||| ||||| |||| ||||||||| ||||| || || ||||| ||| Sbjct 66379 GACATAACAGAAGCTTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCT 66320 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 | | ||||| |||||| ||||||||||||| | || ||| ||| | || Sbjct 66319 TGAAGCGAAATCAATTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACA- 66261 Query 16049 CCCAATTCCAA-CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACA 16107 ||||| || |||||| ||||| || ||||| || || ||||| |||| ||||||| Sbjct 66260 CCCAAGCGCAGTCAATAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACG 66201 Query 16108 GTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167 ||||| || | || | ||| | || || | ||| | | | || || | ||| Sbjct 66200 ATTCATACCAACCAAGGCACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGATCTCAAC 66141 Query 16168 CGCTTCAATGATTAT--ATCTCTTACTACACTATTTAACGGAGGGTT-TAATAAGTGTTT 16224 ||| ||| | || || || || ||| | | | ||| ||| ||| | | Sbjct 66140 CGCATCACAAACAATCGATTTCAAACGTT-CTACATCAAGCTTAGTTCTAAGAAGACTAT 66082 Query 16225 AAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGA 16284 | | | | |||||| |||||||| || | |||||||| || || || ||||| || Sbjct 66081 AGA--TCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGA 66024 Query 16285 AAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACC 16344 ||||| || || ||||||| |||||||| || | ||| ||||| | ||| ||| Sbjct 66023 GAATGTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACC 65964 Query 16345 AGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtt 16404 ||| ||||||||||||||||| ||||| || || | || |||| || | || | Sbjct 65963 AGAGAAGAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGA 65904 Query 16405 tttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTC 16464 | | | |||||||| | ||||| | |||||| | | ||||| || | || Sbjct 65903 T---CCGTTGATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTC 65847 Query 16465 TATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAA 16524 ||||| ||| | || || | | |||||| | ||| || ||||| || | || | Sbjct 65846 GATTGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAG 65787 Query 16525 ACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGC 16584 ||||||||| || |||||||||||||| ||||| || || || || || ||| | ||| Sbjct 65786 ACTATACATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGC 65727 Query 16585 TTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATC 16644 ||| || | || || || || || | | || | || ||| ||| ||||| || Sbjct 65726 TTCTGAGACCTGAACATCGGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTC 65667 Query 16645 GCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGT-- 16702 || || || || || || | |||||| || || | ||||| | | ||| Sbjct 65666 TGATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGA 65607 Query 16703 -TTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGC 16761 ||| |||||| | |||| || | |||||| ||||| | ||||| || || || Sbjct 65606 GTTTTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGC 65547 Query 16762 AACAGCCTTTTTATACATTTTCCATAT 16788 | || || || ||||| | ||| || Sbjct 65546 TTCGGCTTTCTTGTACATCTCCCAGAT 65520 >seq415 Length=609146 Score = 123 bits (136), Expect = 2e-23 Identities = 299/444 (67%), Gaps = 14/444 (3%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||||||| || ||| ||||| |||| ||| | || |||||||| || ||||| ||| Sbjct 100116 GACATAACGGAAGCTTTCTGATAATCACCAACACGTTTCTCAAAGAAGTTAGTTTTCCCT 100175 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 | | || ||| |||||| ||||||| ||||| | | || || || || | Sbjct 100176 TGAAGCGAGATAAGTTCCATCCAATCAAACGGATTAGTAGCACCGTACACCTTCCCGTA- 100234 Query 16049 CCCAATTCCAACAATAATC-TATCCGCCACAAATTCTATATACTGTTTCATTAAATCACA 16107 ||||| || | | || | ||||||| ||||| || |||||||| |||| ||||||| Sbjct 100235 CCCAAGCGCACCCAAAAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACG 100294 Query 16108 GTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167 |||||| || | || || | || || | ||| | | | || || | || Sbjct 100295 GTTCATCCCAACCAACGCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGAC 100354 Query 16168 CGCTTC---AATGATT-ATATCTCT--TACTACACTATTTAACGGAGGGTTTAATAAGTG 16221 ||| || || |||| || || | | || |||| || | || ||| | ||| | Sbjct 100355 CGCGTCGCAAACGATTGATTTCACGCGTTCTTCACT---TAGCTTAGT-TTTGAGAAGCG 100410 Query 16222 TTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTT 16281 | || | | | |||||| ||||| || || | ||||||||| | | || || ||||| Sbjct 100411 TGTAGAGA--AGACAAGCGAAATCGCAGTGTAGTCCTTCGTCTCGAGAGATCAATTCGTT 100468 Query 16282 TGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGA 16341 |||||||| || || ||||| ||||||||||| || | ||| || || | ||| Sbjct 100469 GGAAAATGTTAGTCCAGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCT 100528 Query 16342 ACCAGAAAAGAATATACCTTCAAC 16365 || || ||||| ||||||||||| Sbjct 100529 TCCGGAGAAGAAGATACCTTCAAC 100552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462499055445400