Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1432 188 7e-43 >seq1432 Length=495105 Score = 188 bits (208), Expect = 7e-43 Identities = 444/658 (67%), Gaps = 23/658 (3%) Strand=Plus/Minus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||| ||||| |||| |||||| || ||||| |||||||||||||||| || || || Sbjct 66365 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 66306 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACA-TAAACACTTTATCACAACCTAGTTCTAATA 14030 |||||| ||||||| ||| || | ||| | |||| ||| |||| || || | | Sbjct 66305 TTCCATCCAATCAAAAGGA-TTACTCACACCATACACCTTACCACACCCAAGCGCAGTCA 66247 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 ||| ||||| |||| |||||||| || ||| ||| ||||||| ||||||||| | | Sbjct 66246 ATAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACGATTCATACCAACCA 66187 Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 ||||| | | | ||| ||| | || || | || || | | || Sbjct 66186 AGGCACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGAT---CTCAACCGCATCACAAA 66130 Query 14151 TAATCG---TAATAATTTCATTAGAAGGAGGATA--TTTTAGATGTTTAAAAATTAAACA 14205 ||||| | | | ||| || | || || | | ||| | || | || ||||| Sbjct 66129 CAATCGATTTCAAACGTTC--TACATCAAGCTTAGTTCTAAGAAGACTATAGATCAAACA 66072 Query 14206 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 14265 || |||||||| ||||| || || ||||| ||| | |||||| || ||||| | ||| Sbjct 66071 AGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCC 66012 Query 14266 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATA 14324 ||||| || |||||||| || ||||| ||||| | | | || | | || || ||||||| Sbjct 66011 AGGCATTAAACCTCGTTTCTTCAACCAGAATATCG-AACAAAAGCTACCAGAGAAGAATA 65953 Query 14325 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT- 14383 | || ||||| |||||| |||| | ||||| | ||| ||||| | || | Sbjct 65952 TACCTTCAACGCAAGCAAAAGCTACGA----TTCTCTCAGCGAAGCTTTGAGATCCGTTG 65897 Query 14384 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14443 |||||||| | |||||||| | ||| || | | | || |||||||| || || | Sbjct 65896 ATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCGA 65837 Query 14444 AATAAATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14501 || | ||| || |||||| | || ||| ||||| || || | ||| | ||||||| Sbjct 65836 AAGAGATGATCTCTCTCTTTGTTGTCTTTG--ATGTAAGTGTCGAGAAGGAGACTATACA 65779 Query 14502 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14559 | ||||| || || || || || || || || || || || || | ||||||||| Sbjct 65778 TCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGA 65721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482332100352520