Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 188 7e-43
>seq1432
Length=495105
Score = 188 bits (208), Expect = 7e-43
Identities = 444/658 (67%), Gaps = 23/658 (3%)
Strand=Plus/Minus
Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971
||| ||||| |||| |||||| || ||||| |||||||||||||||| || || ||
Sbjct 66365 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 66306
Query 13972 TTCCATAAAATCAAATGGATTTGTTGACA-TAAACACTTTATCACAACCTAGTTCTAATA 14030
|||||| ||||||| ||| || | ||| | |||| ||| |||| || || | |
Sbjct 66305 TTCCATCCAATCAAAAGGA-TTACTCACACCATACACCTTACCACACCCAAGCGCAGTCA 66247
Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090
||| ||||| |||| |||||||| || ||| ||| ||||||| ||||||||| | |
Sbjct 66246 ATAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACGATTCATACCAACCA 66187
Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150
||||| | | | ||| ||| | || || | || || | | ||
Sbjct 66186 AGGCACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGAT---CTCAACCGCATCACAAA 66130
Query 14151 TAATCG---TAATAATTTCATTAGAAGGAGGATA--TTTTAGATGTTTAAAAATTAAACA 14205
||||| | | | ||| || | || || | | ||| | || | || |||||
Sbjct 66129 CAATCGATTTCAAACGTTC--TACATCAAGCTTAGTTCTAAGAAGACTATAGATCAAACA 66072
Query 14206 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 14265
|| |||||||| ||||| || || ||||| ||| | |||||| || ||||| | |||
Sbjct 66071 AGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCC 66012
Query 14266 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATA 14324
||||| || |||||||| || ||||| ||||| | | | || | | || || |||||||
Sbjct 66011 AGGCATTAAACCTCGTTTCTTCAACCAGAATATCG-AACAAAAGCTACCAGAGAAGAATA 65953
Query 14325 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT- 14383
| || ||||| |||||| |||| | ||||| | ||| ||||| | || |
Sbjct 65952 TACCTTCAACGCAAGCAAAAGCTACGA----TTCTCTCAGCGAAGCTTTGAGATCCGTTG 65897
Query 14384 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14443
|||||||| | |||||||| | ||| || | | | || |||||||| || || |
Sbjct 65896 ATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCGA 65837
Query 14444 AATAAATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14501
|| | ||| || |||||| | || ||| ||||| || || | ||| | |||||||
Sbjct 65836 AAGAGATGATCTCTCTCTTTGTTGTCTTTG--ATGTAAGTGTCGAGAAGGAGACTATACA 65779
Query 14502 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14559
| ||||| || || || || || || || || || || || || | |||||||||
Sbjct 65778 TCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGA 65721
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482332100352520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |