Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq507 93.3 3e-14
seq1891 91.5 1e-13
seq687 91.5 1e-13
seq400 86.0 5e-12
seq1311 84.2 2e-11
>seq507
Length=413332
Score = 93.3 bits (102), Expect = 3e-14
Identities = 153/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172
||| |||| ||| || ||||||||||| || |||||||| ||||||| || || |||
Sbjct 378503 AAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCGGCCAAAGTACGACCATC 378444
Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
|| | ||||| || ||| ||||||||||||| || || || | |||||||| ||
Sbjct 378443 CTCAAGCTGTTTCCCAGCAAAGATAAGTCTTTGCTGGTCAGGAGGAATACCTTCCTTGTC 378384
Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
|| | | ||| || | | | |||||| | ||| || | || ||| |
Sbjct 378383 CTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTAATGGT 378324
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC 18333
||||| || | |||||| || ||||||||||| | ||||
Sbjct 378323 CTTGCCAGTGAGTGTTTTCACGAAAATTTGCATCTGCAAAC 378283
>seq1891
Length=27579
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170
|| || |||| || ||||||||||| || || || ||||| ||||||| || || |
Sbjct 11429 CTGAGAACCAAATGGAGTGTTGATTCCTTCTGGATATTGTAATCGGCCAAGGTACGACCA 11488
Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230
|| |||| ||||| || || |||| | ||| || || ||| || | |||||||||
Sbjct 11489 TCCTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCTTCCTTA 11548
Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290
|| ||| | | |||||| | ||| |||||| | ||| || | || |||
Sbjct 11549 TCCTGAATCTTTGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTAATG 11608
Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
| ||||| || | |||||| || |||||||||||
Sbjct 11609 GTCTTGCCAGTAAGTGTTTTCACGAAAATTTGCAT 11643
>seq687
Length=897029
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170
||||| |||| |||||| ||||| ||||||||||| ||||| || |||| || ||
Sbjct 268056 CTAAGAACCAAGTGAAGGGTTGACTCTTTTTGAATATTGTAATCAGCCAAAGTACGACCG 267997
Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230
|| || | |||||| || ||| |||||||||| || || ||| || | ||||||||
Sbjct 267996 TCCTCAAGTTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCCGGCGGGATTCCTTCCTTG 267937
Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290
|| || | | |||||| | ||| |||||| | ||| |||| || |||
Sbjct 267936 TCTTGGATCTTTGCCTTGACATTGTCAATTGTGTCAGAGCTTTCGACCTCAAGAGTTATG 267877
Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
| ||||| || | || || || || || |||||
Sbjct 267876 GTCTTGCCAGTAAGAGTCTTGACGAAGATCTGCAT 267842
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
||||| | |||||||||||| || ||||| |||||||| || || | || || |||
Sbjct 268737 AGTACAAGGTGAAGTGTTGACTCCTTTTGGATGTTGTAATCCGCAAGAGTGCGACCATCC 268678
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|| | ||| ||||| || |||||||||| ||||| ||| || | ||||| || ||
Sbjct 268677 TCAAGTTGCTTGCCAGCGAAGATAAGTCTCTGTTGGTCCGGAGGGATTCCTTCTTTGTCT 268618
Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
||| | | || || || | ||| ||||| | ||| ||| | || ||| |
Sbjct 268617 TGAATCT-TAGCTTTCACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGAGTAATGGT 268559
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| ||||| | ||||| ||||| || |||||
Sbjct 268558 TTTACCGGTAAGAGTTTTCACAAATATCTGCAT 268526
>seq400
Length=13612
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || ||||||||||| || || ||||| ||||||| || | ||||
Sbjct 2062 AGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGCCAAGGTACGGCCATCT 2121
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|| | ||||| || || |||| | ||| || || ||| || | ||||||||| ||
Sbjct 2122 TCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTCC 2181
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
||| | | ||| || | | | |||||| | ||| || | |||||| |
Sbjct 2182 TGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTC 2241
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||| || | |||||| ||||| ||||||||
Sbjct 2242 TTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 2273
>seq1311
Length=673479
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || || | ||| || | ||||||||| || || || || ||||||||||| ||
Sbjct 79603 CCACCACGAAGACGAAGGACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCA 79544
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| | | ||| || | || || || ||| ||||||| || || || ||| ||
Sbjct 79543 AGAGTTCTTCCATCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGG 79484
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277
| ||||| || || ||| | |||||| | | || ||| ||||||| | |||
Sbjct 79483 ATTCCTTCTTTGTCCTGAATCT-TTGCTTTAACGTTGTCAATAGTGTCAGAGCTCTCAAC 79425
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| | || ||| | ||||| |||| || || ||||| || |||||
Sbjct 79424 TTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 79377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379333648532055
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |