Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq507 93.3 3e-14 seq1891 91.5 1e-13 seq687 91.5 1e-13 seq400 86.0 5e-12 seq1311 84.2 2e-11 >seq507 Length=413332 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| || ||||||||||| || |||||||| ||||||| || || ||| Sbjct 378503 AAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCGGCCAAAGTACGACCATC 378444 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 || | ||||| || ||| ||||||||||||| || || || | |||||||| || Sbjct 378443 CTCAAGCTGTTTCCCAGCAAAGATAAGTCTTTGCTGGTCAGGAGGAATACCTTCCTTGTC 378384 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | ||| || | | | |||||| | ||| || | || ||| | Sbjct 378383 CTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTAATGGT 378324 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC 18333 ||||| || | |||||| || ||||||||||| | |||| Sbjct 378323 CTTGCCAGTGAGTGTTTTCACGAAAATTTGCATCTGCAAAC 378283 >seq1891 Length=27579 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 || || |||| || ||||||||||| || || || ||||| ||||||| || || | Sbjct 11429 CTGAGAACCAAATGGAGTGTTGATTCCTTCTGGATATTGTAATCGGCCAAGGTACGACCA 11488 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 || |||| ||||| || || |||| | ||| || || ||| || | ||||||||| Sbjct 11489 TCCTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCTTCCTTA 11548 Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 || ||| | | |||||| | ||| |||||| | ||| || | || ||| Sbjct 11549 TCCTGAATCTTTGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTAATG 11608 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||||| || | |||||| || ||||||||||| Sbjct 11609 GTCTTGCCAGTAAGTGTTTTCACGAAAATTTGCAT 11643 >seq687 Length=897029 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 ||||| |||| |||||| ||||| ||||||||||| ||||| || |||| || || Sbjct 268056 CTAAGAACCAAGTGAAGGGTTGACTCTTTTTGAATATTGTAATCAGCCAAAGTACGACCG 267997 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 || || | |||||| || ||| |||||||||| || || ||| || | |||||||| Sbjct 267996 TCCTCAAGTTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCCGGCGGGATTCCTTCCTTG 267937 Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 || || | | |||||| | ||| |||||| | ||| |||| || ||| Sbjct 267936 TCTTGGATCTTTGCCTTGACATTGTCAATTGTGTCAGAGCTTTCGACCTCAAGAGTTATG 267877 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||||| || | || || || || || ||||| Sbjct 267876 GTCTTGCCAGTAAGAGTCTTGACGAAGATCTGCAT 267842 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | |||||||||||| || ||||| |||||||| || || | || || ||| Sbjct 268737 AGTACAAGGTGAAGTGTTGACTCCTTTTGGATGTTGTAATCCGCAAGAGTGCGACCATCC 268678 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||| ||||| || |||||||||| ||||| ||| || | ||||| || || Sbjct 268677 TCAAGTTGCTTGCCAGCGAAGATAAGTCTCTGTTGGTCCGGAGGGATTCCTTCTTTGTCT 268618 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | | || || || | ||| ||||| | ||| ||| | || ||| | Sbjct 268617 TGAATCT-TAGCTTTCACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGAGTAATGGT 268559 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| ||||| | ||||| ||||| || ||||| Sbjct 268558 TTTACCGGTAAGAGTTTTCACAAATATCTGCAT 268526 >seq400 Length=13612 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||||||||| || || ||||| ||||||| || | |||| Sbjct 2062 AGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGCCAAGGTACGGCCATCT 2121 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||| || || |||| | ||| || || ||| || | ||||||||| || Sbjct 2122 TCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTCC 2181 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | | ||| || | | | |||||| | ||| || | |||||| | Sbjct 2182 TGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTC 2241 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | |||||| ||||| |||||||| Sbjct 2242 TTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 2273 >seq1311 Length=673479 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||||||||| || || || || ||||||||||| || Sbjct 79603 CCACCACGAAGACGAAGGACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCA 79544 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||| || | || || || ||| ||||||| || || || ||| || Sbjct 79543 AGAGTTCTTCCATCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGG 79484 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||| | |||||| | | || ||| ||||||| | ||| Sbjct 79483 ATTCCTTCTTTGTCCTGAATCT-TTGCTTTAACGTTGTCAATAGTGTCAGAGCTCTCAAC 79425 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || ||| | ||||| |||| || || ||||| || ||||| Sbjct 79424 TTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 79377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379333648532055