Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_003094.2
Length=130759
Score E
Sequences producing significant alignments: (Bits) Value
seq1013 87.8 2e-12
>seq1013
Length=1118043
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
|||||||| || || |||||| |||| || || || |||||| | || || |||||
Sbjct 384835 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCTTAGAGGTTGAATCATCA 384776
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|||| | || | ||| || | || ||| | || ||||| | || || |||
Sbjct 384775 GACACAATCGACAATGTGAAAGCGAAGATTCAAGACAAGGAAGGAATCCCACCGGATCAG 384716
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
||||| || || | || || |||||| ||||||| | || | ||||||| |
Sbjct 384715 CAACGGTTGATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACACTCGCTGATTACAAC 384656
Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059
|| |||||||| | ||||||||||| ||| |||| || | ||||||
Sbjct 384655 ATCCAGAAAGAATCGACGCTTCATTTGGTGCTACGTCTGAGAGGAGGT 384608
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 418292585398880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |