Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq1013 87.8 2e-12 >seq1013 Length=1118043 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || |||||| |||| || || || |||||| | || || ||||| Sbjct 384835 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCTTAGAGGTTGAATCATCA 384776 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| || | || ||| | || ||||| | || || ||| Sbjct 384775 GACACAATCGACAATGTGAAAGCGAAGATTCAAGACAAGGAAGGAATCCCACCGGATCAG 384716 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||| || || | || || |||||| ||||||| | || | ||||||| | Sbjct 384715 CAACGGTTGATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACACTCGCTGATTACAAC 384656 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || |||||||| | ||||||||||| ||| |||| || | |||||| Sbjct 384655 ATCCAGAAAGAATCGACGCTTCATTTGGTGCTACGTCTGAGAGGAGGT 384608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418292585398880