Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1180 150 4e-31 >seq1180 Length=4302264 Score = 150 bits (166), Expect = 4e-31 Identities = 154/198 (78%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| |||||| || |||| || ||| |||| ||||||||| |||||| | | Sbjct 2204244 AGAACAATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTTCTGATCTTAAGC 2204303 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||||||||||||| ||| || |||||||| || |||||||| ||| Sbjct 2204304 TGATGGCACTTCCTCCATGCCACATGTTTGCACAGTTTTATGTTGCAGATGGAGAACTGT 2204363 Query 35637 CGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | || || |||||||||| ||| || ||| || | || || || || || ||||| Sbjct 2204364 CATGTCAAATGTATCAGCGTTCAGCCGATATG--GGTCTCGGAGTACCATTTAACATTGC 2204421 Query 35695 ATCATACTCTCTTCTGAC 35712 ||||||||| ||||| || Sbjct 2204422 ATCATACTCCCTTCTTAC 2204439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989555611618245