Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq1180 150 4e-31
>seq1180
Length=4302264
Score = 150 bits (166), Expect = 4e-31
Identities = 154/198 (78%), Gaps = 5/198 (3%)
Strand=Plus/Plus
Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576
|||| ||||| |||||| || |||| || ||| |||| ||||||||| |||||| | |
Sbjct 2204244 AGAACAATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTTCTGATCTTAAGC 2204303
Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636
| ||||| |||||||||||||||||| ||| || |||||||| || |||||||| |||
Sbjct 2204304 TGATGGCACTTCCTCCATGCCACATGTTTGCACAGTTTTATGTTGCAGATGGAGAACTGT 2204363
Query 35637 CGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694
| || || |||||||||| ||| || ||| || | || || || || || |||||
Sbjct 2204364 CATGTCAAATGTATCAGCGTTCAGCCGATATG--GGTCTCGGAGTACCATTTAACATTGC 2204421
Query 35695 ATCATACTCTCTTCTGAC 35712
||||||||| ||||| ||
Sbjct 2204422 ATCATACTCCCTTCTTAC 2204439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989555611618245
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |