Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1432 239 6e-58 seq415 167 3e-36 seq1009 96.9 4e-15 seq778 86.0 8e-12 >seq1432 Length=495105 Score = 239 bits (264), Expect = 6e-58 Identities = 439/631 (70%), Gaps = 23/631 (4%) Strand=Plus/Minus Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 |||||||| |||||||| ||||| ||||| |||||||| ||| ||||||||||| || Sbjct 66079 ATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAAT 66020 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCGGA 33694 |||||||| ||||||| || || || || | ||| ||||| ||| | || | | || || Sbjct 66019 GTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGA 65961 Query 33695 AAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC 33754 ||||| || ||||| || |||||| || | | |||||| | | || || Sbjct 65960 GAAGAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA----GCTTTGAG 65905 Query 33755 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 || || ||||| || ||||| || || ||||| | |||||||| || ||||| | Sbjct 65904 ATCCGTTGATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGA 65845 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 | || |||||||| | | | || || | ||||| | ||||| |||| | |||| Sbjct 65844 TTGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGAC 65785 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 ||||||| || |||||||| || || || || || || ||||||||||| | ||| | Sbjct 65784 TATACATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTT 65725 Query 33931 CGGTAATCTGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 | | | ||| || || | ||| |||||| || | ||| || || ||||| || Sbjct 65724 CTGAGACCTGAACATC-GGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCT 65666 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGT--GTTAG 34045 || || || || || | || ||||| || || | |||||| |||| || || Sbjct 65665 GATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAG 65606 Query 34046 TTTATTCCAATC---ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 34102 ||| | ||| || |||| |||| ||| | ||| |||||||| | ||||| || || Sbjct 65605 TTT-TCCCAGTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGA 65550 Query 34103 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 || || || || || ||||| | |||||| | | |||||||||||||| ||| || Sbjct 65549 CGCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAA 65490 Query 34163 TCTATTTGGATTTGGTGCAAGGATAGGTTCC 34193 || || ||| |||||| ||||| |||||| Sbjct 65489 TCGATCTGGTGTTGGTGTTAGGATTGGTTCC 65459 >seq415 Length=609146 Score = 167 bits (184), Expect = 3e-36 Identities = 289/414 (70%), Gaps = 7/414 (2%) Strand=Plus/Plus Query 33771 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33830 ||||| | || ||||| || ||||| |||||||| |||||| |||||||| | | Sbjct 100779 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 100838 Query 33831 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33890 |||| || ||||||| | ||| ||||||| | ||||||||||| |||||||| ||| Sbjct 100839 CTTTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATCTCCGAATGGATG 100898 Query 33891 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 33950 |||||||| || ||||| || ||||||||| | ||||| | | || || || | | Sbjct 100899 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC-GGA 100957 Query 33951 CA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAA 34009 || ||||| || | ||| || || ||||| || || || || || || | Sbjct 100958 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCGGCGAAGAAAGCGAG 101017 Query 34010 TACATGTTTTATAAA---ATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCATTGATAT 34065 |||||||| || || | || |||| | | | | |||| | ||| || | | | Sbjct 101018 GACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTT-TCCCAGTCGCGGTTGT 101076 Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 34125 ||| |||| ||| |||||||| | ||||| |||||||| || || ||||| ||||| | Sbjct 101077 CTTGTGATAGATCTACTTCTTCAGCGGTCCAGAATGATGCTTCGGCTTTTTTGTACATTT 101136 Query 34126 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTG 34179 |||||| | | || || |||||||| ||| ||||| | ||| |||||| Sbjct 101137 CCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGGGGTTGGTG 101190 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| |||||||||||||| || || ||||||| | || |||||||| ||||| || || Sbjct 100421 ACAAGCGAAATCGCAGTGTAGTCCTTCGTCTCGAGAGATCAATTCGTTGGAAAATGTTAG 100480 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 ||| ||||| || || || || || ||||| || || ||| || |||||| ||||| Sbjct 100481 TCCAGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAA 100540 Query 33701 GATTCCTTCTAC 33712 ||| ||||| || Sbjct 100541 GATACCTTCAAC 100552 >seq1009 Length=3105692 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 1455503 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAACACCCGCAGCATTGGAACAATACC 1455444 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| ||||||||||| || |||| |||| | ||||| || || || ||| Sbjct 1455443 ATTAGATGCTCCATTGGTACCACGAATGTAGCTTCCAGTTGCACGGATGTTGTGAACTGA 1455384 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| || ||||| ||| ||| || | || || ||| || |||||||| || Sbjct 1455383 AACACCAATGCCCCCAGCCGATTTGCTTATAACAGCACACTCTTTCAATGTGTCATATAT 1455324 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 || || ||||||||||| ||||| | ||||| |||||| Sbjct 1455323 CCCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 1455281 >seq778 Length=452071 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 423151 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 423092 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | ||||| || || || |||| |||| | ||||| |||||| || || Sbjct 423091 ATTAGATGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACCGA 423032 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| || || || || ||| || | || ||| ||| | || || || || Sbjct 423031 AACACCGATACCTCCGGCAGATTTGCTTATAACAGCACATTCTTTGAGTGTTTCGTAAAT 422972 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 ||| || ||||||||||| ||||| | |||||| ||||| Sbjct 422971 GCCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCT 422930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629799972979920