Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 192 5e-44
seq415 114 1e-20
seq778 91.5 1e-13
seq1163 87.8 2e-12
>seq1432
Length=495105
Score = 192 bits (212), Expect = 5e-44
Identities = 564/856 (66%), Gaps = 25/856 (3%)
Strand=Plus/Minus
Query 11339 TTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397
|| ||||| |||| ||||| || | || ||||| ||||| ||||||| || || || |
Sbjct 66364 TTCTGATACTCACCAACTC-TCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 66306
Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457
||||| | |||||||||| ||| | || || |||| || | | | || ||
Sbjct 66305 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 66246
Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517
||| ||||| || || || || || |||||| ||| ||| || ||||||||| | |
Sbjct 66245 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACGATTCATACCAACCA- 66187
Query 11518 ATCCACC-GGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576
| ||| |||| || | | |||||| | || || | |||||||||| | |
Sbjct 66186 AGGCACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGATCTCAACCGCATCACAAACAA 66127
Query 11577 TCGACGTTATAACTTCCTTAGATGGTGGAT-GTAATAA-ATGTTTAAACATTAAACACGC 11634
|||| | | | ||| || || | | || ||| | | || | || ||||| ||
Sbjct 66126 TCGATTTCAAACGTTC--TACATCAAGCTTAGTTCTAAGAAGACTATAGATCAAACAAGC 66069
Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694
|||||||| || | |||||||||||| || | ||| ||||| ||||| | ||| ||
Sbjct 66068 GAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGG 66009
Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754
||| || |||||||| || | ||| ||||| | | ||| |||||| |||||||| ||
Sbjct 66008 CATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACC 65949
Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT------AT 11808
|| || ||||| ||||| | ||| || | | | ||| |||| ||
Sbjct 65948 TTCAACGCAAGCAAAAGCTACGATTCTCTCAGC-GAAGCTTTG-----AGATCCGTTGAT 65895
Query 11809 CCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAA 11868
|||||| | ||||| || |||||||| | || || |||||||| || ||| |||
Sbjct 65894 CCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCGAAA 65835
Query 11869 TAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTC 11928
| ||| | | ||| | || ||| | | || || || | | | ||||||||| ||
Sbjct 65834 GAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTC 65775
Query 11929 TGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTG 11988
||||||||||| || || || ||||| ||||| ||||| || || ||||| |||
Sbjct 65774 AGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGACCTG 65715
Query 11989 TACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAA 12047
||||| |||| |||| | | | |||||| || || || || | || |
Sbjct 65714 AACATCGGACAT-GAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGCGA 65656
Query 12048 AAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTA---ATTTATCCCAAT 12104
| || || || | ||||| || |||| |||||| || |||| | || ||||| |
Sbjct 65655 AGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTCCCAGT 65596
Query 12105 CATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTT 12164
| |||| || | ||| |||||||| ||||||| || || | | || |
Sbjct 65595 CGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTCT 65536
Query 12165 TATACATTTTCCAGAT 12180
| ||||| | ||||||
Sbjct 65535 TGTACATCTCCCAGAT 65520
>seq415
Length=609146
Score = 114 bits (126), Expect = 1e-20
Identities = 276/412 (67%), Gaps = 7/412 (2%)
Strand=Plus/Plus
Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866
|||||||| | ||||| | ||||||||| ||||| || ||||| || || |
Sbjct 100767 ATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGA 100826
Query 11867 AATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926
|| | ||| | ||||| | |||||| | | ||| ||||| | | | |||||||||
Sbjct 100827 AAGAGATGATCTCTTTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATC 100886
Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC 11986
|| ||||| || ||||| || || || || || || |||||| || ||||| ||
Sbjct 100887 TCCGAATGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACT 100946
Query 11987 TGTACATCC-ACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045
|| ||||| |||| || || || | |||||| ||| || || || | ||
Sbjct 100947 TGAACATCGGACATGAA-TCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCGGC 101005
Query 12046 AAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC---GTCTTT-AGTTAATTTATCCC 12101
|| || || || | |||||| || |||| ||| ||| || || | ||| ||||
Sbjct 101006 GAAGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTT-TCCC 101064
Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161
| || |||| ||||| ||||||||||||| ||||||| || ||| | | ||
Sbjct 101065 AGTCGCGGTTGTCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAATGATGCTTCGGCTT 101124
Query 12162 GTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213
||| ||||||| |||||| | | || | ||| ||||| ||| ||| ||
Sbjct 101125 TTTTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCT 101176
>seq778
Length=452071
Score = 91.5 bits (100), Expect = 1e-13
Identities = 110/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459
||||||| ||||||||| ||||| || | |||||||||||||| |||||||| | |
Sbjct 422814 TTGAGGCCTTGGAGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTG 422755
Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519
|||| ||| || |||| ||| || ||| || || | ||| ||||| | ||
Sbjct 422754 AGACATCAAATGGTAAGTTTGGATTGCAGAATCAATGTCTTCCTTGTGGATACCAACAGC 422695
Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTC 38549
|||||||| ||||| ||||| || |||||
Sbjct 422694 AACCCTCATCAGCATGTGTTGAGGCCTTTC 422665
>seq1163
Length=414626
Score = 87.8 bits (96), Expect = 2e-12
Identities = 164/241 (68%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459
||||||| ||||||||| || || || | ||||||||||||| ||||| || | |
Sbjct 27071 TTGAGGCCTTGGAGTTCCTGCATTGAAGAGAATAGGAGATGCATGAGTGAACAATCTCTG 27130
Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519
|||| ||| || |||| ||| || ||| ||||| | |||||| || | |||
Sbjct 27131 AGACATCAAATGGTAAGTTTTGATTGCAGAATCAATATCTTCCATGTGAATGCCAACAGA 27190
Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATA 38579
|| ||||| ||||| ||||| || ||||| | | ||| || ||| | || ||
Sbjct 27191 AACTCTCATGAGCATGTGTTGAGGCCTTTCAACAACTTTCCCATGGACTTTCAAGAGGTA 27250
Query 38580 CGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTATGCTAT 38639
| | | || | |||||| | |||||| ||| ||| | |||| | |||||| | ||
Sbjct 27251 CAACCTCTCAAGTGTTTTAAATCCAAAGTAATCATAATCAAAATCACGGTCGTATACGAT 27310
Query 38640 T 38640
|
Sbjct 27311 T 27311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468511687162160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |