Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1432 192 5e-44 seq415 114 1e-20 seq778 91.5 1e-13 seq1163 87.8 2e-12 >seq1432 Length=495105 Score = 192 bits (212), Expect = 5e-44 Identities = 564/856 (66%), Gaps = 25/856 (3%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 || ||||| |||| ||||| || | || ||||| ||||| ||||||| || || || | Sbjct 66364 TTCTGATACTCACCAACTC-TCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 66306 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 ||||| | |||||||||| ||| | || || |||| || | | | || || Sbjct 66305 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 66246 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 ||| ||||| || || || || || |||||| ||| ||| || ||||||||| | | Sbjct 66245 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACGATTCATACCAACCA- 66187 Query 11518 ATCCACC-GGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576 | ||| |||| || | | |||||| | || || | |||||||||| | | Sbjct 66186 AGGCACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGATCTCAACCGCATCACAAACAA 66127 Query 11577 TCGACGTTATAACTTCCTTAGATGGTGGAT-GTAATAA-ATGTTTAAACATTAAACACGC 11634 |||| | | | ||| || || | | || ||| | | || | || ||||| || Sbjct 66126 TCGATTTCAAACGTTC--TACATCAAGCTTAGTTCTAAGAAGACTATAGATCAAACAAGC 66069 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 |||||||| || | |||||||||||| || | ||| ||||| ||||| | ||| || Sbjct 66068 GAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGG 66009 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 ||| || |||||||| || | ||| ||||| | | ||| |||||| |||||||| || Sbjct 66008 CATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACC 65949 Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT------AT 11808 || || ||||| ||||| | ||| || | | | ||| |||| || Sbjct 65948 TTCAACGCAAGCAAAAGCTACGATTCTCTCAGC-GAAGCTTTG-----AGATCCGTTGAT 65895 Query 11809 CCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAA 11868 |||||| | ||||| || |||||||| | || || |||||||| || ||| ||| Sbjct 65894 CCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCGAAA 65835 Query 11869 TAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTC 11928 | ||| | | ||| | || ||| | | || || || | | | ||||||||| || Sbjct 65834 GAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTC 65775 Query 11929 TGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTG 11988 ||||||||||| || || || ||||| ||||| ||||| || || ||||| ||| Sbjct 65774 AGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGACCTG 65715 Query 11989 TACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAA 12047 ||||| |||| |||| | | | |||||| || || || || | || | Sbjct 65714 AACATCGGACAT-GAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGCGA 65656 Query 12048 AAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTA---ATTTATCCCAAT 12104 | || || || | ||||| || |||| |||||| || |||| | || ||||| | Sbjct 65655 AGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTCCCAGT 65596 Query 12105 CATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTT 12164 | |||| || | ||| |||||||| ||||||| || || | | || | Sbjct 65595 CGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTCT 65536 Query 12165 TATACATTTTCCAGAT 12180 | ||||| | |||||| Sbjct 65535 TGTACATCTCCCAGAT 65520 >seq415 Length=609146 Score = 114 bits (126), Expect = 1e-20 Identities = 276/412 (67%), Gaps = 7/412 (2%) Strand=Plus/Plus Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866 |||||||| | ||||| | ||||||||| ||||| || ||||| || || | Sbjct 100767 ATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGA 100826 Query 11867 AATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926 || | ||| | ||||| | |||||| | | ||| ||||| | | | ||||||||| Sbjct 100827 AAGAGATGATCTCTTTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATC 100886 Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC 11986 || ||||| || ||||| || || || || || || |||||| || ||||| || Sbjct 100887 TCCGAATGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACT 100946 Query 11987 TGTACATCC-ACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045 || ||||| |||| || || || | |||||| ||| || || || | || Sbjct 100947 TGAACATCGGACATGAA-TCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCGGC 101005 Query 12046 AAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC---GTCTTT-AGTTAATTTATCCC 12101 || || || || | |||||| || |||| ||| ||| || || | ||| |||| Sbjct 101006 GAAGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTT-TCCC 101064 Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161 | || |||| ||||| ||||||||||||| ||||||| || ||| | | || Sbjct 101065 AGTCGCGGTTGTCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAATGATGCTTCGGCTT 101124 Query 12162 GTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 ||| ||||||| |||||| | | || | ||| ||||| ||| ||| || Sbjct 101125 TTTTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCT 101176 >seq778 Length=452071 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| ||||||||| ||||| || | |||||||||||||| |||||||| | | Sbjct 422814 TTGAGGCCTTGGAGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTG 422755 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| || |||| ||| || ||| || || | ||| ||||| | || Sbjct 422754 AGACATCAAATGGTAAGTTTGGATTGCAGAATCAATGTCTTCCTTGTGGATACCAACAGC 422695 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTC 38549 |||||||| ||||| ||||| || ||||| Sbjct 422694 AACCCTCATCAGCATGTGTTGAGGCCTTTC 422665 >seq1163 Length=414626 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| ||||||||| || || || | ||||||||||||| ||||| || | | Sbjct 27071 TTGAGGCCTTGGAGTTCCTGCATTGAAGAGAATAGGAGATGCATGAGTGAACAATCTCTG 27130 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| || |||| ||| || ||| ||||| | |||||| || | ||| Sbjct 27131 AGACATCAAATGGTAAGTTTTGATTGCAGAATCAATATCTTCCATGTGAATGCCAACAGA 27190 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATA 38579 || ||||| ||||| ||||| || ||||| | | ||| || ||| | || || Sbjct 27191 AACTCTCATGAGCATGTGTTGAGGCCTTTCAACAACTTTCCCATGGACTTTCAAGAGGTA 27250 Query 38580 CGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTATGCTAT 38639 | | | || | |||||| | |||||| ||| ||| | |||| | |||||| | || Sbjct 27251 CAACCTCTCAAGTGTTTTAAATCCAAAGTAATCATAATCAAAATCACGGTCGTATACGAT 27310 Query 38640 T 38640 | Sbjct 27311 T 27311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468511687162160