Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1432 217 2e-51 seq415 140 4e-28 >seq1432 Length=495105 Score = 217 bits (240), Expect = 2e-51 Identities = 434/631 (69%), Gaps = 23/631 (4%) Strand=Plus/Minus Query 36152 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 36211 |||||||| |||||||| ||||| ||||| |||||||| ||| |||||||| || || Sbjct 66079 ATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAAT 66020 Query 36212 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 36270 |||||||| ||||||| || || || || | ||| ||||| || |||| | | ||||| Sbjct 66019 GTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGA 65961 Query 36271 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 36330 ||||| || ||||| || ||||| || | | |||||| | | || || Sbjct 65960 GAAGAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA----GCTTTGAG 65905 Query 36331 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386 || || ||||| || ||||| || || ||||| | |||||||| ||||| || | Sbjct 65904 ATCCGTTGATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGA 65845 Query 36387 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 36446 | || |||||||| | | | || || | ||||| | || || || | | |||| Sbjct 65844 TTGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGAC 65785 Query 36447 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 36506 ||||||| || |||||||| || || || || ||||| ||||||||||| | ||| | Sbjct 65784 TATACATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTT 65725 Query 36507 CGGTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 36565 | | | ||| || || | ||| |||||| || | ||| || || |||||||| Sbjct 65724 CTGAGACCTGAACATC-GGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCT 65666 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--TTGGT--GTTAG 36621 || || || || || | || ||||| || || | ||||| ||||| || || Sbjct 65665 GATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAG 65606 Query 36622 TTTATTCCAATC---ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 36678 ||| | ||| || |||| |||| ||| | ||| |||||||| | ||||| || || Sbjct 65605 TTT-TCCCAGTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGA 65550 Query 36679 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 || || || || || ||||| | |||||| | | ||||| ||||| || ||| || Sbjct 65549 CGCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAA 65490 Query 36739 TCTATTTTGATTTTTTGCAAGGATTGGTTCC 36769 || || | | || || |||||||||||| Sbjct 65489 TCGATCTGGTGTTGGTGTTAGGATTGGTTCC 65459 >seq415 Length=609146 Score = 140 bits (154), Expect = 4e-28 Identities = 276/402 (69%), Gaps = 11/402 (3%) Strand=Plus/Plus Query 36347 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 36406 ||||| | || ||||| || ||||| || || || || ||| |||||||| | | Sbjct 100779 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 100838 Query 36407 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 36466 |||| || ||||||| | ||| ||||| | | ||||||||||| |||||||| ||| Sbjct 100839 CTTTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATCTCCGAATGGATG 100898 Query 36467 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 36526 |||||||| || || || || ||||||||| | ||||| | | || || || | | Sbjct 100899 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC-GGA 100957 Query 36527 CA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 36585 || ||||| || | ||| || || |||||||| || || || || || | Sbjct 100958 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCGGCGAAGAAAGCGAG 101017 Query 36586 TACATGTTTTATAAAAT-ATTTT-----TCGTTTGGTGTTAGTTTATTCCAATCATTGAT 36639 |||||||| || || | | || ||||| | | | |||| | ||| || | | Sbjct 101018 GACATGTTTGATGAAGTGACGTTCACCGTCGTT--GAGATTGTTT-TCCCAGTCGCGGTT 101074 Query 36640 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 36699 |||| |||| ||| |||||||| | ||||| |||||||| || || ||||| ||||| Sbjct 101075 GTCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAATGATGCTTCGGCTTTTTTGTACAT 101134 Query 36700 ATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741 | |||||| | | || |||||||| || ||| ||||| Sbjct 101135 TTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCT 101176 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| ||||||||||||||||| || ||||||| | || |||||||||||||| || || Sbjct 100421 ACAAGCGAAATCGCAGTGTAGTCCTTCGTCTCGAGAGATCAATTCGTTGGAAAATGTTAG 100480 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 36276 ||| ||||| || || || || || ||||| || || || ||| ||| || ||||| Sbjct 100481 TCCAGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAA 100540 Query 36277 AATTCCTTCTAC 36288 || ||||| || Sbjct 100541 GATACCTTCAAC 100552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658154379388760