Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 217 2e-51
seq415 140 4e-28
>seq1432
Length=495105
Score = 217 bits (240), Expect = 2e-51
Identities = 434/631 (69%), Gaps = 23/631 (4%)
Strand=Plus/Minus
Query 36152 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 36211
|||||||| |||||||| ||||| ||||| |||||||| ||| |||||||| || ||
Sbjct 66079 ATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAAT 66020
Query 36212 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 36270
|||||||| ||||||| || || || || | ||| ||||| || |||| | | |||||
Sbjct 66019 GTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGA 65961
Query 36271 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 36330
||||| || ||||| || ||||| || | | |||||| | | || ||
Sbjct 65960 GAAGAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA----GCTTTGAG 65905
Query 36331 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386
|| || ||||| || ||||| || || ||||| | |||||||| ||||| || |
Sbjct 65904 ATCCGTTGATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGA 65845
Query 36387 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 36446
| || |||||||| | | | || || | ||||| | || || || | | ||||
Sbjct 65844 TTGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGAC 65785
Query 36447 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 36506
||||||| || |||||||| || || || || ||||| ||||||||||| | ||| |
Sbjct 65784 TATACATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTT 65725
Query 36507 CGGTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 36565
| | | ||| || || | ||| |||||| || | ||| || || ||||||||
Sbjct 65724 CTGAGACCTGAACATC-GGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCT 65666
Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--TTGGT--GTTAG 36621
|| || || || || | || ||||| || || | ||||| ||||| || ||
Sbjct 65665 GATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAG 65606
Query 36622 TTTATTCCAATC---ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 36678
||| | ||| || |||| |||| ||| | ||| |||||||| | ||||| || ||
Sbjct 65605 TTT-TCCCAGTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGA 65550
Query 36679 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738
|| || || || || ||||| | |||||| | | ||||| ||||| || ||| ||
Sbjct 65549 CGCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAA 65490
Query 36739 TCTATTTTGATTTTTTGCAAGGATTGGTTCC 36769
|| || | | || || ||||||||||||
Sbjct 65489 TCGATCTGGTGTTGGTGTTAGGATTGGTTCC 65459
>seq415
Length=609146
Score = 140 bits (154), Expect = 4e-28
Identities = 276/402 (69%), Gaps = 11/402 (3%)
Strand=Plus/Plus
Query 36347 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 36406
||||| | || ||||| || ||||| || || || || ||| |||||||| | |
Sbjct 100779 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 100838
Query 36407 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 36466
|||| || ||||||| | ||| ||||| | | ||||||||||| |||||||| |||
Sbjct 100839 CTTTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATCTCCGAATGGATG 100898
Query 36467 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 36526
|||||||| || || || || ||||||||| | ||||| | | || || || | |
Sbjct 100899 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC-GGA 100957
Query 36527 CA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 36585
|| ||||| || | ||| || || |||||||| || || || || || |
Sbjct 100958 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCGGCGAAGAAAGCGAG 101017
Query 36586 TACATGTTTTATAAAAT-ATTTT-----TCGTTTGGTGTTAGTTTATTCCAATCATTGAT 36639
|||||||| || || | | || ||||| | | | |||| | ||| || | |
Sbjct 101018 GACATGTTTGATGAAGTGACGTTCACCGTCGTT--GAGATTGTTT-TCCCAGTCGCGGTT 101074
Query 36640 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 36699
|||| |||| ||| |||||||| | ||||| |||||||| || || ||||| |||||
Sbjct 101075 GTCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAATGATGCTTCGGCTTTTTTGTACAT 101134
Query 36700 ATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741
| |||||| | | || |||||||| || ||| |||||
Sbjct 101135 TTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCT 101176
Score = 98.7 bits (108), Expect = 1e-15
Identities = 101/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216
||| ||||||||||||||||| || ||||||| | || |||||||||||||| || ||
Sbjct 100421 ACAAGCGAAATCGCAGTGTAGTCCTTCGTCTCGAGAGATCAATTCGTTGGAAAATGTTAG 100480
Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 36276
||| ||||| || || || || || ||||| || || || ||| ||| || |||||
Sbjct 100481 TCCAGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAA 100540
Query 36277 AATTCCTTCTAC 36288
|| ||||| ||
Sbjct 100541 GATACCTTCAAC 100552
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658154379388760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |