Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1180 84.2 2e-11 >seq1180 Length=4302264 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 20999 GACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAG 21058 ||||||||||| | | || || |||| ||| || |||||||| || || ||||| Sbjct 2204458 GACGTGAGCGAGAATGCATGTAAGAAGGGAGTATGATGCAATGTTAAATGGTACTCCGAG 2204399 Query 21059 GCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAA 21118 ||||| ||||| || | ||| |||| || || ||||| || || || || ||||| Sbjct 2204398 ACCCATATCGGCTGAACGCTGATACATTTGACATGACAGTTCTCCATCTGCAACATAAAA 2204339 Query 21119 CTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 ||| || | ||| || ||||| || |||||| || || || | || ||||| || Sbjct 2204338 CTGTGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGATCAGAAGGATTCCAAGC 2204279 Query 21179 GCACATAACGATGCGCCGATC 21199 |||| | || || ||||| Sbjct 2204278 CGACATTATAATCCGTCGATC 2204258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427764326928720