Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1432 244 2e-59 seq415 181 2e-40 seq1009 105 1e-17 seq778 104 3e-17 >seq1432 Length=495105 Score = 244 bits (270), Expect = 2e-59 Identities = 615/918 (67%), Gaps = 25/918 (3%) Strand=Plus/Minus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||| || || ||||| || | || || ||||| |||||||| |||| | || || Sbjct 66365 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 66306 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 |||||| ||||||| ||||| | ||| ||| | || | | || | ||| | Sbjct 66305 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 66246 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 || ||||| || ||||| || || || |||||| |||| |||||| || | | Sbjct 66245 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACGATTCATACCAACCAA 66186 Query 49848 TTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 49905 | ||||| || |||| || ||| ||| || || |||||||| | | Sbjct 66185 GGCACAAGGAAGCGCGTCGCA--AACAAACTCTCTCTCGATCTCAACCGCATCACAAACA 66128 Query 49906 ATAGATCT--AACGGTTT-CTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACAT 49962 || ||| | |||| | | | ||| | | | | || || | || | |||||||| Sbjct 66127 ATCGATTTCAAACGTTCTACATCAAGCT-TAGTTCTAAGAA--GACTATAGATCAAACAA 66071 Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022 |||||||| ||||| ||||| |||||||| ||| | |||||| || || |||||||| Sbjct 66070 GCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCA 66011 Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATT 50082 ||||||| || || || || | ||| ||||| || ||| ||||| ||||| || Sbjct 66010 GGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATA 65951 Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTCATGTATCCA 50141 ||||| || ||||| || || | |||||| | | || | | | || ||||| Sbjct 65950 CCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGTTG-ATCCA 65892 Query 50142 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 || ||||| || || ||||| | |||||||| || ||||| || || |||||| Sbjct 65891 TTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCGAAAGAG 65832 Query 50202 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 50261 || | | | || || | ||||| | ||||| |||| | ||||||||||| || || Sbjct 65831 ATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGA 65772 Query 50262 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCAC 50321 |||||| || || || || || || ||||||||||| | ||| || | | ||| || Sbjct 65771 ATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGACCTGAAC 65712 Query 50322 TTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 50380 || | ||| |||||| | | ||| || || |||||||| || || || | Sbjct 65711 ATC-GGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGCGAAGA 65653 Query 50381 ACGCCAATACATGTTTTATAAA---ATGTTTTTCGTTGGGT-GTTAGTTTATTCCAATC- 50435 | || | || ||||| || || | ||| ||||||| | || ||||| | ||| || Sbjct 65652 AGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTT-TCCCAGTCG 65594 Query 50436 --ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 |||| |||| ||| | ||| |||||||| | ||||| || || || || || || Sbjct 65593 CGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTC 65537 Query 50494 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 || ||||| | |||||| | | |||||||||||||| ||| |||| || ||| || Sbjct 65536 TTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGGTGTT 65477 Query 50554 GGTGCAAGGATCGGTTCC 50571 |||| ||||| |||||| Sbjct 65476 GGTGTTAGGATTGGTTCC 65459 >seq415 Length=609146 Score = 181 bits (200), Expect = 2e-40 Identities = 300/427 (70%), Gaps = 7/427 (2%) Strand=Plus/Plus Query 50149 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 50208 ||||| | || ||||| || ||||| |||||||| |||||| |||||||| | | Sbjct 100779 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 100838 Query 50209 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 50268 |||| || ||||||| | ||| ||||||| | ||||||||||| |||||||| ||| Sbjct 100839 CTTTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATCTCCGAATGGATG 100898 Query 50269 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 50328 |||||||| || ||||| || ||||||||| | ||||| | | || || || | | Sbjct 100899 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC-GGA 100957 Query 50329 CA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 50387 || ||||| ||| | ||| || || |||||||| || || || || || | Sbjct 100958 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCGGCGAAGAAAGCGAG 101017 Query 50388 TACATGTTTTATAAA---ATGTTTTTCGTTG-GGTGTTAGTTTATTCCAATCATTGATAT 50443 |||||||| || || | ||| ||| | | | | |||| | ||| || | | | Sbjct 101018 GACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTT-TCCCAGTCGCGGTTGT 101076 Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503 ||| |||| |||||||||||| | ||||| |||||||| || || ||||| ||||| | Sbjct 101077 CTTGTGATAGATCTACTTCTTCAGCGGTCCAGAATGATGCTTCGGCTTTTTTGTACATTT 101136 Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGA 50563 |||||| | | || || |||||||| ||| ||||| | ||| |||||| || | Sbjct 101137 CCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGGGGTTGGTGTTAGAA 101196 Query 50564 TCGGTTC 50570 ||| || Sbjct 101197 GCGGCTC 101203 Score = 105 bits (116), Expect = 1e-17 Identities = 284/428 (66%), Gaps = 10/428 (2%) Strand=Plus/Plus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||| || || ||||| |||||||| || || || |||||||| |||| | || ||| Sbjct 100130 TTTCTGATAATCACCAACACGTTTCTCAAAGAAGTTAGTTTTCCCTTGAAGCGAGATAAG 100189 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 |||||| ||||||||||||| ||| || || | || | || | || | Sbjct 100190 TTCCATCCAATCAAACGGATTAGTAGCACCGTACACCTTCCCGTACCCAAGCGCACCCAA 100249 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT-AA 49846 | |||||||| ||||| || ||||| |||||| |||| ||||| || | || Sbjct 100250 AAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAA 100309 Query 49847 GTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 49904 || ||||| || |||| | ||| ||| || || ||||| || | Sbjct 100310 CGCGCAC-GGAAGCGCGTCGCAC--ACAAACTCTCTCTCGATTTCGACCGCGTCGCAAAC 100366 Query 49905 AATAGATCTAACGGTTTCTTCACTCGG--TGGATGCAATAAATGTTTAAACATCAAACAT 49962 || ||| | ||| ||||||||| | | | | | || || || | | | ||| Sbjct 100367 GATTGATTTCACGCGTTCTTCACTTAGCTTAGTTTTGAGAAGCGTGTAGAGA--AGACAA 100424 Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022 |||||||||||||| || || ||||||| | || | |||||||||||| || ||||| Sbjct 100425 GCGAAATCGCAGTGTAGTCCTTCGTCTCGAGAGATCAATTCGTTGGAAAATGTTAGTCCA 100484 Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATT 50082 ||||| || || || || || ||||| || || || ||| || || |||||||| Sbjct 100485 GGCATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATA 100544 Query 50083 CCTTCTAC 50090 ||||| || Sbjct 100545 CCTTCAAC 100552 >seq1009 Length=3105692 Score = 105 bits (116), Expect = 1e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 1455503 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAACACCCGCAGCATTGGAACAATACC 1455444 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| |||| |||||||| || || ||||||||| | ||||| || || || ||| Sbjct 1455443 ATTAGATGCTCCATTGGTACCACGAATGTAGCTTCCAGTTGCACGGATGTTGTGAACTGA 1455384 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || ||||| ||| ||| || | || || ||| || || ||||| || Sbjct 1455383 AACACCAATGCCCCCAGCCGATTTGCTTATAACAGCACACTCTTTCAATGTGTCATATAT 1455324 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| ||||||||||| ||||| | ||||| |||||| Sbjct 1455323 CCCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 1455281 >seq778 Length=452071 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 423151 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 423092 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || || ||||||||| | ||||| |||||| || || Sbjct 423091 ATTAGATGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACCGA 423032 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || || || ||| || | || ||| ||| | || || || || Sbjct 423031 AACACCGATACCTCCGGCAGATTTGCTTATAACAGCACATTCTTTGAGTGTTTCGTAAAT 422972 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 |||||| ||||||||||| ||||| | |||||| ||||| Sbjct 422971 GCCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCT 422930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718248697451960