Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 197 1e-45
>seq1432
Length=495105
Score = 197 bits (218), Expect = 1e-45
Identities = 567/859 (66%), Gaps = 26/859 (3%)
Strand=Plus/Minus
Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639
||| ||||| |||| |||||| || ||||| |||||||||||||||| || || ||
Sbjct 66365 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 66306
Query 13640 TTCCATAAAATCAAATGGATTTATTGACA-TAAACACTTTATCACAACCTAGTTCTAATA 13698
|||||| ||||||| ||| ||| | ||| | |||| ||| |||| || || | |
Sbjct 66305 TTCCATCCAATCAAAAGGA-TTACTCACACCATACACCTTACCACACCCAAGCGCAGTCA 66247
Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758
||| |||||||||| ||||||||| || ||| ||| ||||||| ||||||||| | |
Sbjct 66246 ATAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACGATTCATACCAACCA 66187
Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818
||||| | | | ||| ||| | || || || || || | ||
Sbjct 66186 AGGCACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGATCTCAACCGCATCACAAACAA 66127
Query 13819 T--AATTGTAATAATCT-CATTAGAAGGAGGATA--TTTTAGATGTTTAAAAATTAAACA 13873
| | || || ||| ||| | || || | | ||| | || | || |||||
Sbjct 66126 TCGATTTCAAACGTTCTACATCA-----AGCTTAGTTCTAAGAAGACTATAGATCAAACA 66072
Query 13874 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13933
|| |||||||| ||||| || || ||||| ||| | |||||| || ||||| | |||
Sbjct 66071 AGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCC 66012
Query 13934 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATAT 13993
||||| || |||||||| || ||||| ||||| | | ||| || || ||||||||
Sbjct 66011 AGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATAT 65952
Query 13994 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT-A 14052
|| ||||| |||||| |||| | ||||| | ||| ||||| | || | |
Sbjct 65951 ACCTTCAACGCAAGCAAAAGCTACGA----TTCTCTCAGCGAAGCTTTGAGATCCGTTGA 65896
Query 14053 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14112
||||||| | |||||||| | ||| || | | | || |||||||| || || ||
Sbjct 65895 TCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCGAA 65836
Query 14113 ATAAATATTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170
| | || || |||||| | || ||| ||||| || || | ||| | ||||||||
Sbjct 65835 AGAGATGATCTCTCTCTTTGTTGTCTTTG--ATGTAAGTGTCGAGAAGGAGACTATACAT 65778
Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA 14230
||||| || || || || || || || || || || || ||| | |||||| ||
Sbjct 65777 CTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGAC 65718
Query 14231 TTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290
|| || || || |||| | | | ||| || ||| || || || || ||
Sbjct 65717 CTGAACATCGGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGC 65658
Query 14291 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT---TTTTTCCA 14347
|| || || | | || ||| || |||| | || || ||| | ||| |||| |||
Sbjct 65657 GAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTCCCA 65598
Query 14348 ATCG-GATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14406
||| ||| || | ||| ||||| ||||| || | ||||| || || | ||||
Sbjct 65597 GTCGCGAT-TGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTT 65539
Query 14407 TTTTATACATTACCCATAT 14425
| || ||||| |||| ||
Sbjct 65538 TCTTGTACATCTCCCAGAT 65520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479714573612600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |