Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1432 197 1e-45 >seq1432 Length=495105 Score = 197 bits (218), Expect = 1e-45 Identities = 567/859 (66%), Gaps = 26/859 (3%) Strand=Plus/Minus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||| ||||| |||| |||||| || ||||| |||||||||||||||| || || || Sbjct 66365 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 66306 Query 13640 TTCCATAAAATCAAATGGATTTATTGACA-TAAACACTTTATCACAACCTAGTTCTAATA 13698 |||||| ||||||| ||| ||| | ||| | |||| ||| |||| || || | | Sbjct 66305 TTCCATCCAATCAAAAGGA-TTACTCACACCATACACCTTACCACACCCAAGCGCAGTCA 66247 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 ||| |||||||||| ||||||||| || ||| ||| ||||||| ||||||||| | | Sbjct 66246 ATAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACGATTCATACCAACCA 66187 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 ||||| | | | ||| ||| | || || || || || | || Sbjct 66186 AGGCACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGATCTCAACCGCATCACAAACAA 66127 Query 13819 T--AATTGTAATAATCT-CATTAGAAGGAGGATA--TTTTAGATGTTTAAAAATTAAACA 13873 | | || || ||| ||| | || || | | ||| | || | || ||||| Sbjct 66126 TCGATTTCAAACGTTCTACATCA-----AGCTTAGTTCTAAGAAGACTATAGATCAAACA 66072 Query 13874 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13933 || |||||||| ||||| || || ||||| ||| | |||||| || ||||| | ||| Sbjct 66071 AGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCC 66012 Query 13934 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATAT 13993 ||||| || |||||||| || ||||| ||||| | | ||| || || |||||||| Sbjct 66011 AGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATAT 65952 Query 13994 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT-A 14052 || ||||| |||||| |||| | ||||| | ||| ||||| | || | | Sbjct 65951 ACCTTCAACGCAAGCAAAAGCTACGA----TTCTCTCAGCGAAGCTTTGAGATCCGTTGA 65896 Query 14053 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14112 ||||||| | |||||||| | ||| || | | | || |||||||| || || || Sbjct 65895 TCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCGAA 65836 Query 14113 ATAAATATTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170 | | || || |||||| | || ||| ||||| || || | ||| | |||||||| Sbjct 65835 AGAGATGATCTCTCTCTTTGTTGTCTTTG--ATGTAAGTGTCGAGAAGGAGACTATACAT 65778 Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA 14230 ||||| || || || || || || || || || || || ||| | |||||| || Sbjct 65777 CTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGAC 65718 Query 14231 TTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290 || || || || |||| | | | ||| || ||| || || || || || Sbjct 65717 CTGAACATCGGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGC 65658 Query 14291 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT---TTTTTCCA 14347 || || || | | || ||| || |||| | || || ||| | ||| |||| ||| Sbjct 65657 GAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTCCCA 65598 Query 14348 ATCG-GATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14406 ||| ||| || | ||| ||||| ||||| || | ||||| || || | |||| Sbjct 65597 GTCGCGAT-TGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTT 65539 Query 14407 TTTTATACATTACCCATAT 14425 | || ||||| |||| || Sbjct 65538 TCTTGTACATCTCCCAGAT 65520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479714573612600