Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 194 2e-44
>seq1432
Length=495105
Score = 194 bits (214), Expect = 2e-44
Identities = 446/657 (68%), Gaps = 21/657 (3%)
Strand=Plus/Minus
Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427
||| ||||| |||| |||||| || |||||||||||||||||||||| || || ||
Sbjct 66365 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 66306
Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13486
|||||| |||| || ||||| | ||| | |||| ||| |||| || || | |
Sbjct 66305 TTCCATCCAATCAAAAGGATTACTC-ACACCATACACCTTACCACACCCAAGCGCAGTCA 66247
Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546
|||| |||||||||| ||||||||| || ||| ||| ||||||| ||||||||| | |
Sbjct 66246 ATAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACGATTCATACCAACCA 66187
Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606
||||| | | ||| ||| | || || | || || | | ||
Sbjct 66186 AGGCACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGAT---CTCAACCGCATCACAAA 66130
Query 13607 TAATC--TTAATAATGTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAACAC 13662
|||| || || || | | | || || || ||| | || | || |||||
Sbjct 66129 CAATCGATTTCAAACGTTCT-ACATCAAGCTTAGTTCTAAGAAGACTATAGATCAAACAA 66071
Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722
|| |||||||| ||||| || || ||||| ||| | |||||| || ||||| | |||
Sbjct 66070 GCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCA 66011
Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATAT 13781
||||| || |||||||| || ||||| ||||| | | | || | | || || ||||||||
Sbjct 66010 GGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGAGAAGAATAT 65952
Query 13782 TCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT-A 13840
|| ||||| |||||| |||| | || |||| | ||| ||||| | | | |
Sbjct 65951 ACCTTCAACGCAAGCAAAAGCTACGATTC--TCTC--AGCGAAGCTTTGAGATCCGTTGA 65896
Query 13841 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGA 13900
||||||| | |||||||| | ||| || | | | || |||||||||||||| |
Sbjct 65895 TCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCGAA 65836
Query 13901 ATAAATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 13958
| | ||| || |||||| | || ||| ||||| || || | ||| | ||||||||
Sbjct 65835 AGAGATGATCTCTCTCTTTGTTGTCTTTG--ATGTAAGTGTCGAGAAGGAGACTATACAT 65778
Query 13959 TTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14015
||||| || || || || || || || || || || || || | |||||||||
Sbjct 65777 CTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGA 65721
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478575405495960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |