Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1432 194 2e-44 >seq1432 Length=495105 Score = 194 bits (214), Expect = 2e-44 Identities = 446/657 (68%), Gaps = 21/657 (3%) Strand=Plus/Minus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| ||||| |||| |||||| || |||||||||||||||||||||| || || || Sbjct 66365 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 66306 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13486 |||||| |||| || ||||| | ||| | |||| ||| |||| || || | | Sbjct 66305 TTCCATCCAATCAAAAGGATTACTC-ACACCATACACCTTACCACACCCAAGCGCAGTCA 66247 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 |||| |||||||||| ||||||||| || ||| ||| ||||||| ||||||||| | | Sbjct 66246 ATAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACGATTCATACCAACCA 66187 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 ||||| | | ||| ||| | || || | || || | | || Sbjct 66186 AGGCACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGAT---CTCAACCGCATCACAAA 66130 Query 13607 TAATC--TTAATAATGTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAACAC 13662 |||| || || || | | | || || || ||| | || | || ||||| Sbjct 66129 CAATCGATTTCAAACGTTCT-ACATCAAGCTTAGTTCTAAGAAGACTATAGATCAAACAA 66071 Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722 || |||||||| ||||| || || ||||| ||| | |||||| || ||||| | ||| Sbjct 66070 GCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCA 66011 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATAT 13781 ||||| || |||||||| || ||||| ||||| | | | || | | || || |||||||| Sbjct 66010 GGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGAGAAGAATAT 65952 Query 13782 TCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT-A 13840 || ||||| |||||| |||| | || |||| | ||| ||||| | | | | Sbjct 65951 ACCTTCAACGCAAGCAAAAGCTACGATTC--TCTC--AGCGAAGCTTTGAGATCCGTTGA 65896 Query 13841 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGA 13900 ||||||| | |||||||| | ||| || | | | || |||||||||||||| | Sbjct 65895 TCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCGAA 65836 Query 13901 ATAAATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 13958 | | ||| || |||||| | || ||| ||||| || || | ||| | |||||||| Sbjct 65835 AGAGATGATCTCTCTCTTTGTTGTCTTTG--ATGTAAGTGTCGAGAAGGAGACTATACAT 65778 Query 13959 TTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14015 ||||| || || || || || || || || || || || || | ||||||||| Sbjct 65777 CTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGA 65721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478575405495960