Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq788 107 1e-18 seq1013 104 2e-17 seq1891 100 2e-16 seq1206 95.1 9e-15 seq895 91.5 1e-13 >seq788 Length=1574065 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | |||||||| || | || |||||| || | |||||||| | | Sbjct 101043 CCTCCACGGAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCC 100984 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| |||| ||||| || || ||||| || ||||| | ||| || || | || Sbjct 100983 AAGGTACGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 100924 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| |||| || || | | ||||| | ||| || Sbjct 100923 ATACCTTCCTTATCCTGGATCTTGGCTTTCACGTTGTCGATGGTGTCTGAACTCTCCACC 100864 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| ||||| ||||||||||| ||||| Sbjct 100863 TCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 100817 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | |||||||| || | || |||||| || | |||||||| | | Sbjct 108479 CCTCCACGGAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCC 108420 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || ||||| ||||| ||||| || ||||| | ||| || || | || Sbjct 108419 AAGGTACGACCATCCTCCAACTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 108360 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| | || || || ||| ||||| | ||| || Sbjct 108359 ATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTGTCAATAGTGTCTGAACTCTCCACC 108300 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| ||||| ||||||||||| ||||| Sbjct 108299 TCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 108253 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| | |||||||||||| | || |||||| || | ||||| || | | Sbjct 100815 CCTCCACGCAGACGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCC 100756 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | |||| || | ||| || ||||| || ||||| | ||| || || | || Sbjct 100755 AAAGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 100696 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| ||||| || |||| ||||||| || | | ||||| ||| ||| || Sbjct 100695 ATACCCTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTC-AGAGCTCTCCAC 100637 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| ||||| || | || || || || |||||||| Sbjct 100636 CTCCAAAGTGATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 100589 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| | |||||||||||| | || |||||| || | ||||| || | | Sbjct 108251 CCTCCACGCAGACGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCC 108192 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | |||| || | ||| || ||||| || ||||| | ||| || || | || Sbjct 108191 AAAGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 108132 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| ||||| || |||| ||||||| || | | ||||| ||| ||| || Sbjct 108131 ATACCCTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTC-AGAGCTCTCYAC 108073 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| ||||| || | || || || || |||||||| Sbjct 108072 CTCCAAAGTGATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 108025 >seq1013 Length=1118043 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||| | || ||||||||| | || || || || | |||||||| | Sbjct 384609 CCTCCTCTCAGACGTAGCACCAAATGAAGCGTCGATTCTTTCTGGATGTTGTAATCAGCG 384668 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | |||| ||||||||||| ||||| || ||||| || || ||||| | || Sbjct 384669 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGGG 384728 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| | |||| || || | | |||||| | || || Sbjct 384729 ATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCAACC 384788 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCT 43114 |||| ||||| || || || ||||| |||||||| || || |||||||||| Sbjct 384789 TCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTCT 384840 >seq1891 Length=27579 Score = 100 bits (110), Expect = 2e-16 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||||| || ||||| || | ||||||||||| ||| ||||| | || ||| Sbjct 11435 ACCAAATGGAGTGTTGATTCCTTCTGGATATTGTAATCGGCCAAGGTACGACCATCCTCC 11494 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||||| ||||| || ||||||| ||| || || | || | |||||| || || ||| Sbjct 11495 AGCTGTTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCTTCCTTATC-CTG 11553 Query 43021 -ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 ||| | ||||| || ||| ||||| ||| ||| || || | || || || | Sbjct 11554 AATCTTTGCCTTGACATTGTCAATGGTGTC-AGAGCTCTCAACCTCGAGAGTAATGGTCT 11612 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || || || |||||||| ||||||||||| Sbjct 11613 TGCCAGTAAGTGTTTTCACGAAAATTTGCAT 11643 >seq1206 Length=1516661 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | |||||||||| || |||||| |||| || | || || ||||| ||| Sbjct 451407 TCCTTCTGGATGTTGTAATCGGCTAAGGTACGTCCGTCTTCGAGCTGCTTTCCGGCGAAA 451466 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||||||| || || | || | |||||| || || |||| | ||||| || Sbjct 451467 ATCAATCGCTGCTGGTCCGGTGGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTG 451526 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||||| | |||||| || | || || || || || ||||| |||||||| Sbjct 451527 TCGATGGTGTCAGAGGACTCGACCTCAAGAGTGATCGTCTTCCCCGTTAGGGTTTTCACG 451586 Query 43099 AAAATTTGCATTTTCTT 43115 || || ||||| || || Sbjct 451587 AAGATCTGCATCTTTTT 451603 >seq895 Length=2238827 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | ||||| |||| | ||||| |||| |||| ||||| ||||| || Sbjct 1033426 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAA 1033485 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 |||||||||||| || || | || | ||||| || || |||| | |||| || | Sbjct 1033486 AATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATT 1033545 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | || ||| | || || |||| ||||| || || || ||||| |||||||| Sbjct 1033546 GTCGATGGTATCGGACGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCAC 1033605 Query 43098 AAAAATTTGCATTTT 43112 || || ||||| || Sbjct 1033606 GAAGATCTGCATCTT 1033620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381359193257862