Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 223 5e-53
seq415 187 3e-42
>seq1432
Length=495105
Score = 223 bits (246), Expect = 5e-53
Identities = 433/630 (69%), Gaps = 21/630 (3%)
Strand=Plus/Minus
Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118
|||||||| |||||||| ||||| ||||| || ||||| ||| |||||||| || ||
Sbjct 66079 ATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAAT 66020
Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGA 42177
|||||||| ||||||| || || || || | ||| ||||| || |||| | | |||||
Sbjct 66019 GTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGA 65961
Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 42237
||||| || ||||| || ||||| || | | |||||| | | || ||
Sbjct 65960 GAAGAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA----GCTTTGAG 65905
Query 42238 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293
|| || ||||| || ||||| || || ||||| | |||||||| || ||||| |
Sbjct 65904 ATCCGTTGATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGA 65845
Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353
| || |||||||| | | | || || | ||||| | || || |||| | ||||
Sbjct 65844 TTGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGAC 65785
Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413
||||||| || |||||||| || || || || || || ||||||||||| | || |
Sbjct 65784 TATACATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTT 65725
Query 42414 CGGTAACCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472
| | ||||| || || | ||| |||||| | | ||| ||| || ||||||||
Sbjct 65724 CTGAGACCTGAACATC-GGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCT 65666
Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA---AT 42529
|| || || || || | || ||||| || || | |||||| |||| |
Sbjct 65665 GATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAG 65606
Query 42530 TTATTCCAATC---ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGAT 42586
|| | ||| || |||| |||| ||| | ||| |||||||| | ||||| || ||
Sbjct 65605 TTTTCCCAGTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGAC 65549
Query 42587 GCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAAT 42646
||||| || || || ||||| | |||||| | | ||||| |||||||| ||| |||
Sbjct 65548 GCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAAT 65489
Query 42647 CTATTTGGATTTGGTGCAAGGATCGGTTCC 42676
| || ||| |||||| ||||| ||||||
Sbjct 65488 CGATCTGGTGTTGGTGTTAGGATTGGTTCC 65459
>seq415
Length=609146
Score = 187 bits (206), Expect = 3e-42
Identities = 300/426 (70%), Gaps = 5/426 (1%)
Strand=Plus/Plus
Query 42254 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 42313
||||| | || ||||| || ||||| |||||||| |||||| |||||||| | |
Sbjct 100779 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 100838
Query 42314 ttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATG 42373
|||| || ||||||| | ||| ||||||| | ||||||||||| || ||||| |||
Sbjct 100839 CTTTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATCTCCGAATGGATG 100898
Query 42374 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTA 42433
|||||||| || ||||| || ||||||||| | ||||| | || || || || | |
Sbjct 100899 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC-GGA 100957
Query 42434 CA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 42492
|| ||||| ||| | ||| || || |||||||| || || || || || |
Sbjct 100958 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCGGCGAAGAAAGCGAG 101017
Query 42493 TACATGTTTTATAAAATATTTTTCGTC--CGGTGTTAAT-TTATTCCAATCATTGATATC 42549
|||||||| || || | ||| | || || | | || | ||| || | | ||
Sbjct 101018 GACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTTTCCCAGTCGCGGTTGTC 101077
Query 42550 TTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATT 42609
|| |||| |||||||||||| | ||||| ||||||||||| || ||||| ||||| |
Sbjct 101078 TTGTGATAGATCTACTTCTTCAGCGGTCCAGAATGATGCTTCGGCTTTTTTGTACATTTC 101137
Query 42610 CCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGAT 42669
|||||| | | || ||||||||||| ||| ||||| | ||| |||||| || |
Sbjct 101138 CCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGGGGTTGGTGTTAGAAG 101197
Query 42670 CGGTTC 42675
||| ||
Sbjct 101198 CGGCTC 101203
Score = 95.1 bits (104), Expect = 2e-14
Identities = 100/132 (76%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123
||| |||||||||||||| || || || |||| | || |||||||||||||| || ||
Sbjct 100421 ACAAGCGAAATCGCAGTGTAGTCCTTCGTCTCGAGAGATCAATTCGTTGGAAAATGTTAG 100480
Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183
||| ||||| || || || || || ||||| || || || ||| ||| || |||||
Sbjct 100481 TCCAGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAA 100540
Query 42184 GATTCCTTCTAC 42195
||| ||||| ||
Sbjct 100541 GATACCTTCAAC 100552
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671120416491640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |