Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq507 104 2e-17 seq1013 98.7 1e-15 seq713 91.5 1e-13 seq530 91.5 1e-13 seq980 86.0 6e-12 seq1780 84.2 2e-11 seq687 84.2 2e-11 >seq507 Length=413332 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| |||||| | ||| || || | || |||||||| || |||||||||||| | Sbjct 378517 CCACCTCTTAAACGAAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCGGCC 378458 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | || || || ||||| |||||| |||| || | |||||| || ||||| Sbjct 378457 AAAGTACGACCATCCTCAAGCTGTTTCCCAGCAAAGATAAGTCTTTGCTGGTCAGGAGGA 378398 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || ||| || | | || | ||||| | | || || Sbjct 378397 ATACCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACC 378338 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||||| || | |||||| ||||| |||||||| Sbjct 378337 TCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 378291 >seq1013 Length=1118043 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | || ||||||| || |||||||| || ||||||||||| Sbjct 384609 CCTCCTCTCAGACGTAGCACCAAATGAAGCGTCGATTCTTTCTGGATGTTGTAATCAGCG 384668 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || |||||| | |||||| || || |||||| ||||||||||| || || Sbjct 384669 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGGG 384728 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || ||| | | || | ||||| | | ||| || Sbjct 384729 ATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCAACC 384788 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || || | ||||| ||||| || ||||| Sbjct 384789 TCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 384835 >seq713 Length=176098 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| | || ||||||| ||||| |||||||| ||||||||||| Sbjct 45756 CCACCTCTGAGACGAAGCACCAAATGAAGGGTAGACTCTTTTTGAATGTTGTAATCAGCG 45697 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| ||| || || || ||||||||| |||| || | |||||||| ||||| Sbjct 45696 AGTGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGG 45637 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| || ||| | | || | || || | ||| || Sbjct 45636 ATTCCTTCCTTATCCTGAATCTTAGCTTTAACATTATCAATAGTATCAGAACTTTCAACC 45577 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || ||||| ||||| || || || || || |||||| Sbjct 45576 TCCAAAGTGATGGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCATA 45529 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | | ||| ||||| | || ||||| || || || |||||||| | Sbjct 45528 CCACCTCTTAACCTGAGAACCAAATGTAGCGTTGATTCCTTCTGGATATTGTAATCTGCC 45469 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| || ||||||||||| |||||| | ||||| || ||||| Sbjct 45468 AAGGTACGACCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTCTGCTGGTCTGGAGGA 45409 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| ||| || | | || | ||||| | | || || Sbjct 45408 ATACCTTCCTTATCCTGAATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACC 45349 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||||| || | |||||| ||||| |||||||| Sbjct 45348 TCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 45302 >seq530 Length=553347 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || || |||| || || || || || ||||||||||| | Sbjct 260440 CCTCCACGGAGACGCAAGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCC 260381 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| ||||| || || || |||||| | ||||| || ||||| Sbjct 260380 AAAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 260321 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||| || ||| | | || | ||||| | | || ||| Sbjct 260320 ATACCCTCTTTGTCTTGAATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCTCTCCACT 260261 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || |||||||| || || || || |||||| Sbjct 260260 TCCAAAGTAATGGTCTTTCCTGTCAATGTCTTGACAAAAATCTGCATA 260213 >seq980 Length=1630315 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | | ||| ||||| | || ||||| || || || |||||||| | Sbjct 2852 CCACCTCTTAACCTGAGAACCAAATGTAGCGTTGATTCCTTCTGGATATTGTAATCTGCC 2911 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| || ||||||||||| |||||| | ||||| || ||||| Sbjct 2912 AAGGTACGACCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTCTGCTGGTCTGGAGGA 2971 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| ||| || | | || | ||||| | | || || Sbjct 2972 ATACCTTCCTTATCCTGAATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACC 3031 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||||| || | |||||| ||||| |||||||| Sbjct 3032 TCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 3078 >seq1780 Length=424430 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 143016 || || || | ||| | ||| | |||| || || ||||| || ||||||||||| ||| Sbjct 96774 CCACCGCGGAGACGGAGAACAAGGTGAAGAGTTGACTCTTTCTGGATGTTGTAATCCGCT 96833 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| ||||| || || || || ||| |||| || | |||||||| || || Sbjct 96834 AAA-GTGCGACCATCTTCAAGCTGCTTCCCGGCAAAGATTAGCCTCTGCTGATCCGGTGG 96892 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| ||| ||| || | | || | || || | | ||| || Sbjct 96893 GATCCCTTCTTTGTCCTGAATCTTTGCCTTCACATTGTCAATGGTATCAGAGCTTTCCAC 96952 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || | ||||| || ||||| || || || ||||| ||||| Sbjct 96953 TTCAAGCGTGATGGTCTTTCCCGTCAAAGTCTTGACAAATATCTGCAT 97000 >seq687 Length=897029 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| || |||| || || |||||||| || |||||||| || || | ||| || Sbjct 268051 AACCAAGTGAAGGGTTGACTCTTTTTGAATATTGTAATCAGCCAAAGTACGACCGTCCTC 267992 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||||||||| ||| |||| || | ||||| || || || || ||||| ||||| Sbjct 267991 AAGTTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCCGGCGGGATTCCTTCCTTGTCTTG 267932 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || ||| || | | || | ||||| | | ||| || |||| ||| | ||||| Sbjct 267931 GATCTTTGCCTTGACATTGTCAATTGTGTCAGAGCTTTCGACCTCAAGAGTTATGGTCTT 267872 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| || | || || ||||| || |||||| Sbjct 267871 GCCAGTAAGAGTCTTGACGAAGATCTGCATA 267841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507000209934480