Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1180 96.9 5e-15 >seq1180 Length=4302264 Score = 96.9 bits (106), Expect = 5e-15 Identities = 135/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 |||||| |||||| ||| | |||| |||||| | ||||||||| | ||| | Sbjct 2204241 TCAAGAACAATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTTCTGATCTTA 2204300 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC-TCGTACGATGGCAA 70302 | | |||||||| || || || ||| |||||| | |||||||| | | | ||||| | Sbjct 2204301 AGCTGATGGCACTTCCTCCATGCCACATGTTTG-CACAGTTTTATGTTGCA-GATGGAGA 2204358 Query 70303 ATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACAT 70362 | ||||||| |||||||||| | ||||| ||||| ||||| ||||| |||||||| Sbjct 2204359 ACTGTCATGTCAAATGTATCAGCGTTCAGCCGATATGGGTCTCGGAGTACCATTTAACAT 2204418 Query 70363 TGCA 70366 |||| Sbjct 2204419 TGCA 2204422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741038459605640