Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq1180 96.9 5e-15
>seq1180
Length=4302264
Score = 96.9 bits (106), Expect = 5e-15
Identities = 135/184 (73%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244
|||||| |||||| ||| | |||| |||||| | ||||||||| | ||| |
Sbjct 2204241 TCAAGAACAATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTTCTGATCTTA 2204300
Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC-TCGTACGATGGCAA 70302
| | |||||||| || || || ||| |||||| | |||||||| | | | ||||| |
Sbjct 2204301 AGCTGATGGCACTTCCTCCATGCCACATGTTTG-CACAGTTTTATGTTGCA-GATGGAGA 2204358
Query 70303 ATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACAT 70362
| ||||||| |||||||||| | ||||| ||||| ||||| ||||| ||||||||
Sbjct 2204359 ACTGTCATGTCAAATGTATCAGCGTTCAGCCGATATGGGTCTCGGAGTACCATTTAACAT 2204418
Query 70363 TGCA 70366
||||
Sbjct 2204419 TGCA 2204422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741038459605640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |