Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq530 95.1 1e-14 seq687 93.3 4e-14 seq1891 91.5 1e-13 seq980 91.5 1e-13 >seq530 Length=553347 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | || |||||||| ||||| |||||||| |||| ||| || | || Sbjct 260425 AAGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTTCTGCCATCT 260366 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || || || || || || | || | |||||||| ||| || | ||||||||||| Sbjct 260365 TCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCTTTGTCT 260306 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || ||| || | | ||| || || |||| ||| | |||||||| Sbjct 260305 TGAATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCTCTCCACTTCCAAAGTAATGGTC 260246 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || ||||| || || ||||||||||| ||||| Sbjct 260245 TTTCCTGTCAATGTCTTGACAAAAATCTGCAT 260214 >seq687 Length=897029 Score = 93.3 bits (102), Expect = 4e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| |||||| | |||| ||| | || ||||| ||||||||||||||||| ||| Sbjct 268068 CCACCTCTCAACCTAAGAACCAAGTGAAGGGTTGACTCTTTTTGAATATTGTAATCAGCC 268009 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 | || ||||||| || |||||||| ||| | |||||||||||||| ||| Sbjct 268008 AAAGTACGACCGTCCTCAAGTTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCC 267955 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| |||||| | ||| ||| | | ||||||||||||||||||||||| ||| Sbjct 267840 CCACCTCTCAACCTAAGGGCCAAGTGGAGAATTGACTCCTTTTGAATATTGTAATCAGCC 267781 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||| || |||||||| ||| | ||||||| ||||| || | || Sbjct 267780 AAAGTACGGCCATCCTCGAGTTGTTTACCGGCAAAGATAAGTCGTTGCTGGTCTAGAGGA 267721 Query 18935 ACGCCCTCTTTGTC 18948 | || |||||||| Sbjct 267720 ATCCCTTCTTTGTC 267707 >seq1891 Length=27579 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | |||||||| || || ||||||||||| || | ||| ||||||| Sbjct 10978 CACCAAATGGAGGGTAGACTCTTTCTGGATATTGTAATCAGCGAGTGTGCGACCGTCCTC 11037 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| | ||||| |||||||||||| || | || || ||||| Sbjct 11038 AAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTG 11097 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||| || | | | | ||||| | || || | ||||||||||| Sbjct 11098 AATCTTAGCTTTAACATTGTCAATCGTATCCGAACTTTCAACCTCCAAAGTAATGGTTTT 11157 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || || || ||||| || ||||| Sbjct 11158 CCCTGTCAATGTCTTCACAAAGATCTGCAT 11187 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/201 (69%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC----TCCAGCTGTTT 18900 |||||||||||||| || |||||||| || | || |||||| || ||||| || Sbjct 11219 GTAGACTCCTTTTGGATGTTGTAATCAGCAAGGGT----GCGTCCATCTTCAAGCTGCTT 11274 Query 18901 ACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTG 18960 ||| ||| | ||||| |||||||||||| || | |||||||| || ||| || Sbjct 11275 ACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCTTTATCCTGAATCTTAGC 11334 Query 18961 TTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAA 19020 ||| || | | | |||||| | || || | || |||||||| || || || Sbjct 11335 TTTCACATTATCAATAGTATCAGAACTTTCAACCTCCAAAGTGATGGTTTTGCCAGTCAA 11394 Query 19021 AGTTTTGACAAAAATTTGCAT 19041 || || |||||||| ||||| Sbjct 11395 CGTCTTCACAAAAATCTGCAT 11415 >seq980 Length=1630315 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | |||||||| || || ||||||||||| || | ||| ||||||| Sbjct 2641 CACCAAATGGAGGGTAGACTCTTTCTGGATATTGTAATCAGCGAGTGTGCGACCGTCCTC 2700 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| | ||||| |||||||||||| || | |||||||| || Sbjct 2701 AAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCTTTATCCTG 2760 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||| || | | | |||||| | || || | || |||||||| Sbjct 2761 AATCTTAGCTTTAACATTATCAATAGTATCAGAACTTTCAACCTCCAAAGTGATGGTTTT 2820 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || || |||||||| ||||| Sbjct 2821 GCCAGTCAACGTCTTCACAAAAATCTGCAT 2850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414561487215166