Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq530 95.1 1e-14
seq687 93.3 4e-14
seq1891 91.5 1e-13
seq980 91.5 1e-13
>seq530
Length=553347
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889
|| |||| ||| | || |||||||| ||||| |||||||| |||| ||| || | ||
Sbjct 260425 AAGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTTCTGCCATCT 260366
Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949
|| || || || || || | || | |||||||| ||| || | |||||||||||
Sbjct 260365 TCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCTTTGTCT 260306
Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009
||| || ||| || | | ||| || || |||| ||| | ||||||||
Sbjct 260305 TGAATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCTCTCCACTTCCAAAGTAATGGTC 260246
Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| ||||| || || ||||||||||| |||||
Sbjct 260245 TTTCCTGTCAATGTCTTGACAAAAATCTGCAT 260214
>seq687
Length=897029
Score = 93.3 bits (102), Expect = 4e-14
Identities = 89/114 (78%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
|| |||| |||||| | |||| ||| | || ||||| ||||||||||||||||| |||
Sbjct 268068 CCACCTCTCAACCTAAGAACCAAGTGAAGGGTTGACTCTTTTTGAATATTGTAATCAGCC 268009
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928
| || ||||||| || |||||||| ||| | |||||||||||||| |||
Sbjct 268008 AAAGTACGACCGTCCTCAAGTTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCC 267955
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
|| |||| |||||| | ||| ||| | | ||||||||||||||||||||||| |||
Sbjct 267840 CCACCTCTCAACCTAAGGGCCAAGTGGAGAATTGACTCCTTTTGAATATTGTAATCAGCC 267781
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| || | | ||||| || |||||||| ||| | ||||||| ||||| || | ||
Sbjct 267780 AAAGTACGGCCATCCTCGAGTTGTTTACCGGCAAAGATAAGTCGTTGCTGGTCTAGAGGA 267721
Query 18935 ACGCCCTCTTTGTC 18948
| || ||||||||
Sbjct 267720 ATCCCTTCTTTGTC 267707
>seq1891
Length=27579
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| || | |||||||| || || ||||||||||| || | ||| |||||||
Sbjct 10978 CACCAAATGGAGGGTAGACTCTTTCTGGATATTGTAATCAGCGAGTGTGCGACCGTCCTC 11037
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||||| ||||| ||| | ||||| |||||||||||| || | || || |||||
Sbjct 11038 AAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTG 11097
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
||| || ||| || | | | | ||||| | || || | |||||||||||
Sbjct 11098 AATCTTAGCTTTAACATTGTCAATCGTATCCGAACTTTCAACCTCCAAAGTAATGGTTTT 11157
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
||||| || || || ||||| || |||||
Sbjct 11158 CCCTGTCAATGTCTTCACAAAGATCTGCAT 11187
Score = 82.4 bits (90), Expect = 6e-11
Identities = 139/201 (69%), Gaps = 8/201 (4%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC----TCCAGCTGTTT 18900
|||||||||||||| || |||||||| || | || |||||| || ||||| ||
Sbjct 11219 GTAGACTCCTTTTGGATGTTGTAATCAGCAAGGGT----GCGTCCATCTTCAAGCTGCTT 11274
Query 18901 ACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTG 18960
||| ||| | ||||| |||||||||||| || | |||||||| || ||| ||
Sbjct 11275 ACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCTTTATCCTGAATCTTAGC 11334
Query 18961 TTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAA 19020
||| || | | | |||||| | || || | || |||||||| || || ||
Sbjct 11335 TTTCACATTATCAATAGTATCAGAACTTTCAACCTCCAAAGTGATGGTTTTGCCAGTCAA 11394
Query 19021 AGTTTTGACAAAAATTTGCAT 19041
|| || |||||||| |||||
Sbjct 11395 CGTCTTCACAAAAATCTGCAT 11415
>seq980
Length=1630315
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| || | |||||||| || || ||||||||||| || | ||| |||||||
Sbjct 2641 CACCAAATGGAGGGTAGACTCTTTCTGGATATTGTAATCAGCGAGTGTGCGACCGTCCTC 2700
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||||| ||||| ||| | ||||| |||||||||||| || | |||||||| ||
Sbjct 2701 AAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCTTTATCCTG 2760
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
||| || ||| || | | | |||||| | || || | || ||||||||
Sbjct 2761 AATCTTAGCTTTAACATTATCAATAGTATCAGAACTTTCAACCTCCAAAGTGATGGTTTT 2820
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || || || || |||||||| |||||
Sbjct 2821 GCCAGTCAACGTCTTCACAAAAATCTGCAT 2850
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414561487215166
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |