Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq687 89.7 3e-13 seq1891 84.2 1e-11 seq1676 84.2 1e-11 seq912 82.4 5e-11 >seq687 Length=897029 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| |||| | ||||| || | || ||||||||||| ||||||||||||| Sbjct 268069 ACCACCTCTCAACCTAAGAACCAAGTGAAGGGTTGACTCTTTTTGAATATTGTAATCAGC 268010 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 |||| | | ||| || | ||| || || ||| || | | |||||||||| || Sbjct 268009 CAAAGTACGACCGTCCTCAAGTTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCCGGCGG 267950 Query 33262 TATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || ||||| || || | | | ||| || || | | ||| ||||| | || Sbjct 267949 GATTCCTTCCTTGTCTTGGATCTTTGCC---TTGACATTGTCAATTGTGTCAGAGCTTTC 267893 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || |||||||| || || || |||||||| || ||||| || ||||| Sbjct 267892 GACCTCAAGAGTTATGGTCTTGCCAGTAAGAGTCTTGACGAAGATCTGCAT 267842 >seq1891 Length=27579 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||||| | |||||||| | ||| || || || || ||||||||||| | Sbjct 11416 ACCACCTCTTAACCTGAGAACCAAATGGAGTGTTGATTCCTTCTGGATATTGTAATCGGC 11475 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | | || |||| || || || || || || | |||||||||| || Sbjct 11476 CAAGGTACGACCATCCTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGG 11535 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || ||||| || || |||| |||| | || | | ||| ||||| | | Sbjct 11536 AATACCTTCCTTATCCTGAATCTTTGCCT---TGACATTGTCAATGGTGTCAGAGCTCTC 11592 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || ||||| || || || || ||||| ||||| |||||||||||||| Sbjct 11593 AACCTCGAGAGTAATGGTCTTGCCAGTAAGTGTTTTCACGAAAATTTGCAT 11643 >seq1676 Length=2083552 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| ||||||| ||||| || | || |||||||| || || ||||||||| | Sbjct 1910231 CCACCTCTCAACCGCAGAACCAAGTGGAGAGTTGACTCTTTCTGGATGCTGTAATCAGCC 1910172 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | || || || | || | || ||| || | ||||||||||| || Sbjct 1910171 AAGGTAAGGCCATCCTCGAGCTGTTGACCGGCAAAGATAAGTCGTTGCTGGTCTAAAGGA 1910112 Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||||||||| || | | || ||| || || | || || | |||| || || | Sbjct 1910111 ATGCCTTCTTTGTCCTGGATCATTGCC---TTGACATTATGGATGGAGTCGGAGGTTTCA 1910055 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || ||||| || ||| | |||||||| ||| || | ||||| ||| Sbjct 1910054 ACATCAAGTGTTATGGTCTTTTCTGTAAGAGTCTTTGCGTAGATTTGGATG 1910004 >seq912 Length=1276171 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | || | ||||||||| | || ||||||||||| || ||||| |||| Sbjct 751613 ACCACCTCTGAGACGAAGCACCAAATGGAGGGTTGACTCTTTTTGGATGTTGTAGTCAGC 751554 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || || | || || | ||||| || ||| || | | |||||||||| || Sbjct 751553 CAGTGTGCGACCATCCTCTAGCTGCTTACCTGCAAAGATAAGCCTCTGCTGGTCCGGTGG 751494 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || || ||||| || |||| ||| || | | ||| ||||| | | ||| Sbjct 751493 GATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAAC 751434 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || ||||| ||||| ||||| || || || |||||||| Sbjct 751433 CTCTAGAGTGATTGTTTTACCCGTGAGAGTCTTCACAAAGATTTGCAT 751386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318768901256622