Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq687 89.7 3e-13
seq1891 84.2 1e-11
seq1676 84.2 1e-11
seq912 82.4 5e-11
>seq687
Length=897029
Score = 89.7 bits (98), Expect = 3e-13
Identities = 159/231 (69%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| ||||| |||| | ||||| || | || ||||||||||| |||||||||||||
Sbjct 268069 ACCACCTCTCAACCTAAGAACCAAGTGAAGGGTTGACTCTTTTTGAATATTGTAATCAGC 268010
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
|||| | | ||| || | ||| || || ||| || | | |||||||||| ||
Sbjct 268009 CAAAGTACGACCGTCCTCAAGTTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCCGGCGG 267950
Query 33262 TATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318
|| ||||| || || | | | ||| || || | | ||| ||||| | ||
Sbjct 267949 GATTCCTTCCTTGTCTTGGATCTTTGCC---TTGACATTGTCAATTGTGTCAGAGCTTTC 267893
Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || |||||||| || || || |||||||| || ||||| || |||||
Sbjct 267892 GACCTCAAGAGTTATGGTCTTGCCAGTAAGAGTCTTGACGAAGATCTGCAT 267842
>seq1891
Length=27579
Score = 84.2 bits (92), Expect = 1e-11
Identities = 158/231 (68%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| |||||||||| | |||||||| | ||| || || || || ||||||||||| |
Sbjct 11416 ACCACCTCTTAACCTGAGAACCAAATGGAGTGTTGATTCCTTCTGGATATTGTAATCGGC 11475
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
||| | | || |||| || || || || || || | |||||||||| ||
Sbjct 11476 CAAGGTACGACCATCCTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGG 11535
Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318
|| ||||| || || |||| |||| | || | | ||| ||||| | |
Sbjct 11536 AATACCTTCCTTATCCTGAATCTTTGCCT---TGACATTGTCAATGGTGTCAGAGCTCTC 11592
Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||| || ||||| || || || || ||||| ||||| ||||||||||||||
Sbjct 11593 AACCTCGAGAGTAATGGTCTTGCCAGTAAGTGTTTTCACGAAAATTTGCAT 11643
>seq1676
Length=2083552
Score = 84.2 bits (92), Expect = 1e-11
Identities = 158/231 (68%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| ||||| ||||||| ||||| || | || |||||||| || || ||||||||| |
Sbjct 1910231 CCACCTCTCAACCGCAGAACCAAGTGGAGAGTTGACTCTTTCTGGATGCTGTAATCAGCC 1910172
Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262
|| | || || || | || | || ||| || | ||||||||||| ||
Sbjct 1910171 AAGGTAAGGCCATCCTCGAGCTGTTGACCGGCAAAGATAAGTCGTTGCTGGTCTAAAGGA 1910112
Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319
||||||||||| || | | || ||| || || | || || | |||| || || |
Sbjct 1910111 ATGCCTTCTTTGTCCTGGATCATTGCC---TTGACATTATGGATGGAGTCGGAGGTTTCA 1910055
Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|| || || ||||| || ||| | |||||||| ||| || | ||||| |||
Sbjct 1910054 ACATCAAGTGTTATGGTCTTTTCTGTAAGAGTCTTTGCGTAGATTTGGATG 1910004
>seq912
Length=1276171
Score = 82.4 bits (90), Expect = 5e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| ||||| | || | ||||||||| | || ||||||||||| || ||||| ||||
Sbjct 751613 ACCACCTCTGAGACGAAGCACCAAATGGAGGGTTGACTCTTTTTGGATGTTGTAGTCAGC 751554
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
|| || | || || | ||||| || ||| || | | |||||||||| ||
Sbjct 751553 CAGTGTGCGACCATCCTCTAGCTGCTTACCTGCAAAGATAAGCCTCTGCTGGTCCGGTGG 751494
Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321
|| || ||||| || |||| ||| || | | ||| ||||| | | |||
Sbjct 751493 GATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAAC 751434
Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||| || ||||| ||||| ||||| || || || ||||||||
Sbjct 751433 CTCTAGAGTGATTGTTTTACCCGTGAGAGTCTTCACAAAGATTTGCAT 751386
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318768901256622
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |