Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq400 100 2e-16 seq788 98.7 7e-16 seq1013 91.5 1e-13 seq912 91.5 1e-13 seq507 91.5 1e-13 seq980 86.0 4e-12 seq713 86.0 4e-12 >seq400 Length=13612 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||| | | ||||||||| || ||| |||||| || || || || || Sbjct 1590 ACCACCTCTCAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGC 1649 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || ||| |||| || | || || || ||||| || | || ||||||||| |||| Sbjct 1650 TAGGGTACGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGAGG 1709 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || |||||||| ||| || |||||| | ||| || |||| ||| || Sbjct 1710 GATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAAC 1769 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || ||||||||||| || | |||||| ||||| |||||||| Sbjct 1770 CTCGAGGGTGATTGTTTTACCAGTGAGAGTCTTGACAAAGATTTGCAT 1817 >seq788 Length=1574065 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 |||||||| || || || ||| || || || || ||||| || ||| |||| Sbjct 108464 AACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCCAAGGTACGACCATCC 108405 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||| |||||||| || || ||||||| ||||||||| |||| | |||||| ||||| Sbjct 108404 TCCAACTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCTTCCTTATCC 108345 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || || || || | ||| ||| |||| |||||| || | || || || Sbjct 108344 TGGATCTTGGCCTTCACGTTGTCAATAGTGTCTGAACTCTCCACCTCCAAGGTGATGGTC 108285 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| | |||||||||||| || ||||| Sbjct 108284 TTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 108253 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 |||||||| || || || ||| || || || || ||||| || ||| | || Sbjct 101028 AACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCCAAGGTACGACCGTCC 100969 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||| || ||||| || || ||||||| ||||||||| |||| | |||||| ||||| Sbjct 100968 TCCAACTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCTTCCTTATCC 100909 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || || ||| || | | | || |||| |||||| || | || || || Sbjct 100908 TGGATCTTGGCTTTCACGTTGTCGATGGTGTCTGAACTCTCCACCTCCAAGGTGATGGTC 100849 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| | |||||||||||| || ||||| Sbjct 100848 TTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 100817 >seq1013 Length=1118043 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||||| | || ||||||||| ||||| ||||| || || || ||||| Sbjct 384608 ACCTCCTCTCAGACGTAGCACCAAATGAAGCGTCGATTCTTTCTGGATGTTGTAATCAGC 384667 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | | || |||||||||||||| || || |||||||||||||| ||| | || Sbjct 384668 GAGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGG 384727 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || ||| ||| || ||| || | | | || |||| | || || Sbjct 384728 GATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCAAC 384787 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || ||||| || || |||| || ||||| || || ||||| Sbjct 384788 CTCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 384835 >seq912 Length=1276171 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | | | ||||||||| || || ||||||||| || || || || Sbjct 751613 ACCACCTCTGAGACGAAGCACCAAATGGAGGGTTGACTCTTTTTGGATGTTGTAGTCAGC 751554 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || |||| || | || || |||||||| || | || ||||||||| | || Sbjct 751553 CAGTGTGCGACCATCCTCTAGCTGCTTACCTGCAAAGATAAGCCTCTGCTGGTCCGGTGG 751494 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || |||||||| ||| || |||||| | ||| || |||| ||| || Sbjct 751493 GATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAAC 751434 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || ||||||||||| || | |||||||||||| |||||||| Sbjct 751433 CTCTAGAGTGATTGTTTTACCCGTGAGAGTCTTCACAAAGATTTGCAT 751386 >seq507 Length=413332 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | | | ||||||||| || ||| |||||| || ||||| || || Sbjct 378746 ACCACCTCTGAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATATTGTAGTCAGC 378687 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | ||| |||| || | ||||| || || || || | | ||||||||| | || Sbjct 378686 GAGTGTACGACCATCCTCAAGCTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCCGGTGG 378627 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||||||| || || ||| || | ||| ||| |||| ||| || Sbjct 378626 GATTCCCTCTTTATCTTGGATCTTAGCTTTAACATTGTCAATAGTGTCTGAACTCTCAAC 378567 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || |||||||| || || |||||||||||||| || ||||| Sbjct 378566 CTCGAGAGTGATTGTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCAT 378519 >seq980 Length=1630315 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| || || | |||||||||||||| || || || ||||| ||||| Sbjct 2851 ACCACCTCTTAACCTGAGAACCAAATGTAGCGTTGATTCCTTCTGGATATTGTAATCTGC 2910 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || ||| |||| || | ||||| || || || ||||| | |||||||| |||| Sbjct 2911 CAAGGTACGACCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTCTGCTGGTCTGGAGG 2970 Query 44014 TACACCTTCTTTAT-CTGAAATTTTTTGTTTGACCATAG-CAACAGTATCTGCCGGCTCC 44071 | |||||| |||| ||||| | |||| | | ||| | ||| || || | ||| Sbjct 2971 AATACCTTCCTTATCCTGAA--TCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCA 3028 Query 44072 ACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||| ||||| || || || || | || ||||| || |||||||| Sbjct 3029 ACCTCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 3078 >seq713 Length=176098 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| || || | |||||||||||||| || || || ||||| ||||| Sbjct 45529 ACCACCTCTTAACCTGAGAACCAAATGTAGCGTTGATTCCTTCTGGATATTGTAATCTGC 45470 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || ||| |||| || | ||||| || || || ||||| | |||||||| |||| Sbjct 45469 CAAGGTACGACCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTCTGCTGGTCTGGAGG 45410 Query 44014 TACACCTTCTTTAT-CTGAAATTTTTTGTTTGACCATAG-CAACAGTATCTGCCGGCTCC 44071 | |||||| |||| ||||| | |||| | | ||| | ||| || || | ||| Sbjct 45409 AATACCTTCCTTATCCTGAA--TCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCA 45352 Query 44072 ACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||| ||||| || || || || | || ||||| || |||||||| Sbjct 45351 ACCTCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 45302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354767918895372