Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq400 100 2e-16
seq788 98.7 7e-16
seq1013 91.5 1e-13
seq912 91.5 1e-13
seq507 91.5 1e-13
seq980 86.0 4e-12
seq713 86.0 4e-12
>seq400
Length=13612
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953
||| ||||||| | | ||||||||| || ||| |||||| || || || || ||
Sbjct 1590 ACCACCTCTCAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGC 1649
Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013
|| ||| |||| || | || || || ||||| || | || ||||||||| ||||
Sbjct 1650 TAGGGTACGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGAGG 1709
Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073
| || |||||||| ||| || |||||| | ||| || |||| ||| ||
Sbjct 1710 GATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAAC 1769
Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|||| || ||||||||||| || | |||||| ||||| ||||||||
Sbjct 1770 CTCGAGGGTGATTGTTTTACCAGTGAGAGTCTTGACAAAGATTTGCAT 1817
>seq788
Length=1574065
Score = 98.7 bits (108), Expect = 7e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969
|||||||| || || || ||| || || || || ||||| || ||| ||||
Sbjct 108464 AACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCCAAGGTACGACCATCC 108405
Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029
||||| |||||||| || || ||||||| ||||||||| |||| | |||||| |||||
Sbjct 108404 TCCAACTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCTTCCTTATCC 108345
Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089
|| || || || | ||| ||| |||| |||||| || | || || ||
Sbjct 108344 TGGATCTTGGCCTTCACGTTGTCAATAGTGTCTGAACTCTCCACCTCCAAGGTGATGGTC 108285
Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| ||||| | |||||||||||| || |||||
Sbjct 108284 TTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 108253
Score = 86.0 bits (94), Expect = 4e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969
|||||||| || || || ||| || || || || ||||| || ||| | ||
Sbjct 101028 AACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCCAAGGTACGACCGTCC 100969
Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029
||||| || ||||| || || ||||||| ||||||||| |||| | |||||| |||||
Sbjct 100968 TCCAACTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCTTCCTTATCC 100909
Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089
|| || ||| || | | | || |||| |||||| || | || || ||
Sbjct 100908 TGGATCTTGGCTTTCACGTTGTCGATGGTGTCTGAACTCTCCACCTCCAAGGTGATGGTC 100849
Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| ||||| | |||||||||||| || |||||
Sbjct 100848 TTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 100817
>seq1013
Length=1118043
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953
||||||||||| | || ||||||||| ||||| ||||| || || || |||||
Sbjct 384608 ACCTCCTCTCAGACGTAGCACCAAATGAAGCGTCGATTCTTTCTGGATGTTGTAATCAGC 384667
Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013
| | | | || |||||||||||||| || || |||||||||||||| ||| | ||
Sbjct 384668 GAGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGG 384727
Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073
| ||||| || ||| ||| || ||| || | | | || |||| | || ||
Sbjct 384728 GATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCAAC 384787
Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| | || ||||| || || |||| || ||||| || || |||||
Sbjct 384788 CTCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 384835
>seq912
Length=1276171
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953
||| ||||| | | | ||||||||| || || ||||||||| || || || ||
Sbjct 751613 ACCACCTCTGAGACGAAGCACCAAATGGAGGGTTGACTCTTTTTGGATGTTGTAGTCAGC 751554
Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013
| | || |||| || | || || |||||||| || | || ||||||||| | ||
Sbjct 751553 CAGTGTGCGACCATCCTCTAGCTGCTTACCTGCAAAGATAAGCCTCTGCTGGTCCGGTGG 751494
Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073
| || |||||||| ||| || |||||| | ||| || |||| ||| ||
Sbjct 751493 GATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAAC 751434
Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| | || ||||||||||| || | |||||||||||| ||||||||
Sbjct 751433 CTCTAGAGTGATTGTTTTACCCGTGAGAGTCTTCACAAAGATTTGCAT 751386
>seq507
Length=413332
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953
||| ||||| | | | ||||||||| || ||| |||||| || ||||| || ||
Sbjct 378746 ACCACCTCTGAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATATTGTAGTCAGC 378687
Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013
| | ||| |||| || | ||||| || || || || | | ||||||||| | ||
Sbjct 378686 GAGTGTACGACCATCCTCAAGCTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCCGGTGG 378627
Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073
| || ||||||||| || || ||| || | ||| ||| |||| ||| ||
Sbjct 378626 GATTCCCTCTTTATCTTGGATCTTAGCTTTAACATTGTCAATAGTGTCTGAACTCTCAAC 378567
Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|||| || |||||||| || || |||||||||||||| || |||||
Sbjct 378566 CTCGAGAGTGATTGTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCAT 378519
>seq980
Length=1630315
Score = 86.0 bits (94), Expect = 4e-12
Identities = 159/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953
||| ||||| || || | |||||||||||||| || || || ||||| |||||
Sbjct 2851 ACCACCTCTTAACCTGAGAACCAAATGTAGCGTTGATTCCTTCTGGATATTGTAATCTGC 2910
Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013
|| ||| |||| || | ||||| || || || ||||| | |||||||| ||||
Sbjct 2911 CAAGGTACGACCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTCTGCTGGTCTGGAGG 2970
Query 44014 TACACCTTCTTTAT-CTGAAATTTTTTGTTTGACCATAG-CAACAGTATCTGCCGGCTCC 44071
| |||||| |||| ||||| | |||| | | ||| | ||| || || | |||
Sbjct 2971 AATACCTTCCTTATCCTGAA--TCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCA 3028
Query 44072 ACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| |||| ||||| || || || || | || ||||| || ||||||||
Sbjct 3029 ACCTCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 3078
>seq713
Length=176098
Score = 86.0 bits (94), Expect = 4e-12
Identities = 159/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953
||| ||||| || || | |||||||||||||| || || || ||||| |||||
Sbjct 45529 ACCACCTCTTAACCTGAGAACCAAATGTAGCGTTGATTCCTTCTGGATATTGTAATCTGC 45470
Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013
|| ||| |||| || | ||||| || || || ||||| | |||||||| ||||
Sbjct 45469 CAAGGTACGACCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTCTGCTGGTCTGGAGG 45410
Query 44014 TACACCTTCTTTAT-CTGAAATTTTTTGTTTGACCATAG-CAACAGTATCTGCCGGCTCC 44071
| |||||| |||| ||||| | |||| | | ||| | ||| || || | |||
Sbjct 45409 AATACCTTCCTTATCCTGAA--TCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCA 45352
Query 44072 ACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| |||| ||||| || || || || | || ||||| || ||||||||
Sbjct 45351 ACCTCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 45302
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354767918895372
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |