Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq713 91.5 1e-13
seq1891 86.0 5e-12
seq400 86.0 5e-12
seq443 84.2 2e-11
seq980 82.4 6e-11
>seq713
Length=176098
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058
||||||||| || ||||| |||||||| ||||||||||| | | || | || ||
Sbjct 45739 CACCAAATGAAGGGTAGACTCTTTTTGAATGTTGTAATCAGCGAGTGTGCGACCGTCCTC 45680
Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118
| || || || ||| | ||||||||||| ||||| || | ||||| || ||
Sbjct 45679 AAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTATCCTG 45620
Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178
||| || ||| || | ||| || ||| | ||| |||| || ||||||||
Sbjct 45619 AATCTTAGCTTTAACATTATCAATAGTATCAGAACTTTCAACCTCCAAAGTGATGGTTTT 45560
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
||| |||||||| || |||||||| |||||
Sbjct 45559 GCCAGTCAACGTCTTCACAAAAATCTGCAT 45530
>seq1891
Length=27579
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058
||| | ||| || ||||| || ||||| ||||||||||| | | || ||||||
Sbjct 11206 CACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCAAGGGTGCGTCCATCTTC 11265
Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118
| || || || ||| | ||||||||||| ||||| || | || ||||| ||
Sbjct 11266 AAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCTTTATCCTG 11325
Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178
||| || |||||| | ||| || ||| | ||| |||| || ||||||||
Sbjct 11326 AATCTTAGCTTTCACATTATCAATAGTATCAGAACTTTCAACCTCCAAAGTGATGGTTTT 11385
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
||| |||||||| || |||||||| |||||
Sbjct 11386 GCCAGTCAACGTCTTCACAAAAATCTGCAT 11415
>seq400
Length=13612
Score = 86.0 bits (94), Expect = 5e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058
||||||||| ||||| || || || || |||||||| || | | ||| | ||| ||
Sbjct 1836 CACCAAATGAAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCTTCCATCCTC 1895
Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118
| || || || ||| | ||||||||||| || || || | |||||||||||
Sbjct 1896 AAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATTCCTTCTTTGTCCTG 1955
Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTT 20177
||| ||| ||| || | | ||| || || || | || ||||| |||||||| |
Sbjct 1956 AATCTTTGCTTTGACGTTGTCAATAGTGTC-AGAGCTCTCAACTTCCAAAGTAATGGTCT 2014
Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|||| |||| || |||||||| || |||||
Sbjct 2015 TGCCAGTCAGAGTCTTGACAAAGATCTGCAT 2045
>seq443
Length=3098630
Score = 84.2 bits (92), Expect = 2e-11
Identities = 107/146 (73%), Gaps = 1/146 (1%)
Strand=Plus/Minus
Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029
|| ||||| |||| |||| | |||||| || | ||| || ||||| ||||| || |||
Sbjct 1849606 TTGATCATGGTTCCACCTCTGAGCCTCAAGACAAGATGAAGAGTAGACTCTTTCTGGATG 1849547
Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089
||||||||| | | || |||||||||||| || || ||| |||| ||||| |||
Sbjct 1849546 TTGTAATCGGCTAAGGTCCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGT 1849487
Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115
||||| || | || ||||||||
Sbjct 1849486 TGATCAGGTGGAATACCCTCTTTGTC 1849461
>seq980
Length=1630315
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058
||||||||| || ||||| ||||| || || |||||||| | | || | || ||
Sbjct 2641 CACCAAATGGAGGGTAGACTCTTTCTGGATATTGTAATCAGCGAGTGTGCGACCGTCCTC 2700
Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118
| || || || ||| | ||||||||||| ||||| || | || ||||| ||
Sbjct 2701 AAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCTTTATCCTG 2760
Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178
||| || ||| || | ||| || ||| | ||| |||| || ||||||||
Sbjct 2761 AATCTTAGCTTTAACATTATCAATAGTATCAGAACTTTCAACCTCCAAAGTGATGGTTTT 2820
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
||| |||||||| || |||||||| |||||
Sbjct 2821 GCCAGTCAACGTCTTCACAAAAATCTGCAT 2850
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419575750383159
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |