Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq713 91.5 1e-13 seq1891 86.0 5e-12 seq400 86.0 5e-12 seq443 84.2 2e-11 seq980 82.4 6e-11 >seq713 Length=176098 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||||||| || ||||| |||||||| ||||||||||| | | || | || || Sbjct 45739 CACCAAATGAAGGGTAGACTCTTTTTGAATGTTGTAATCAGCGAGTGTGCGACCGTCCTC 45680 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | || || || ||| | ||||||||||| ||||| || | ||||| || || Sbjct 45679 AAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTATCCTG 45620 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| || ||| || | ||| || ||| | ||| |||| || |||||||| Sbjct 45619 AATCTTAGCTTTAACATTATCAATAGTATCAGAACTTTCAACCTCCAAAGTGATGGTTTT 45560 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| |||||||| || |||||||| ||||| Sbjct 45559 GCCAGTCAACGTCTTCACAAAAATCTGCAT 45530 >seq1891 Length=27579 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||| | ||| || ||||| || ||||| ||||||||||| | | || |||||| Sbjct 11206 CACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCAAGGGTGCGTCCATCTTC 11265 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | || || || ||| | ||||||||||| ||||| || | || ||||| || Sbjct 11266 AAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCTTTATCCTG 11325 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| || |||||| | ||| || ||| | ||| |||| || |||||||| Sbjct 11326 AATCTTAGCTTTCACATTATCAATAGTATCAGAACTTTCAACCTCCAAAGTGATGGTTTT 11385 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| |||||||| || |||||||| ||||| Sbjct 11386 GCCAGTCAACGTCTTCACAAAAATCTGCAT 11415 >seq400 Length=13612 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||||||| ||||| || || || || |||||||| || | | ||| | ||| || Sbjct 1836 CACCAAATGAAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCTTCCATCCTC 1895 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | || || || ||| | ||||||||||| || || || | ||||||||||| Sbjct 1896 AAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATTCCTTCTTTGTCCTG 1955 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTT 20177 ||| ||| ||| || | | ||| || || || | || ||||| |||||||| | Sbjct 1956 AATCTTTGCTTTGACGTTGTCAATAGTGTC-AGAGCTCTCAACTTCCAAAGTAATGGTCT 2014 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| |||| || |||||||| || ||||| Sbjct 2015 TGCCAGTCAGAGTCTTGACAAAGATCTGCAT 2045 >seq443 Length=3098630 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| |||| |||| | |||||| || | ||| || ||||| ||||| || ||| Sbjct 1849606 TTGATCATGGTTCCACCTCTGAGCCTCAAGACAAGATGAAGAGTAGACTCTTTCTGGATG 1849547 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 ||||||||| | | || |||||||||||| || || ||| |||| ||||| ||| Sbjct 1849546 TTGTAATCGGCTAAGGTCCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGT 1849487 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || | || |||||||| Sbjct 1849486 TGATCAGGTGGAATACCCTCTTTGTC 1849461 >seq980 Length=1630315 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||||||| || ||||| ||||| || || |||||||| | | || | || || Sbjct 2641 CACCAAATGGAGGGTAGACTCTTTCTGGATATTGTAATCAGCGAGTGTGCGACCGTCCTC 2700 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | || || || ||| | ||||||||||| ||||| || | || ||||| || Sbjct 2701 AAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCTTTATCCTG 2760 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| || ||| || | ||| || ||| | ||| |||| || |||||||| Sbjct 2761 AATCTTAGCTTTAACATTATCAATAGTATCAGAACTTTCAACCTCCAAAGTGATGGTTTT 2820 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| |||||||| || |||||||| ||||| Sbjct 2821 GCCAGTCAACGTCTTCACAAAAATCTGCAT 2850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419575750383159