Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 197 1e-45
>seq1432
Length=495105
Score = 197 bits (218), Expect = 1e-45
Identities = 568/866 (66%), Gaps = 12/866 (1%)
Strand=Plus/Minus
Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904
||||||||||| ||| ||||| || | |||||| || ||||||||||| ||||| |||
Sbjct 66379 GACATAACAGAAGCTTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCT 66320
Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC 12964
| | |||||| |||||| |||| |||||||| || || ||| || ||||
Sbjct 66319 TGAAGCGAAATCAATTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACAC 66260
Query 12965 CCTAATTCTAGT-AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACA 13023
|| || ||| || || || |||||||||||||| |||||||| |||| |||||||
Sbjct 66259 CC-AAGCGCAGTCAATAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACG 66201
Query 13024 GTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAAC 13083
||||| || | || ||| | || || | ||| | | | || || |||||
Sbjct 66200 ATTCATACCAACCAAGGCACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGATCTCAAC 66141
Query 13084 TGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAG--GATTTGATAGATGCTTA 13141
|| || ||| || | || ||||||| || || | || ||| | ||
Sbjct 66140 CGCATCACAAACAATCGAT-TTCAAACGTTCT-ACATCAAGCTTAGTTCTAAGAAGACTA 66083
Query 13142 AACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201
| |||| ||| || ||||||||||| | ||||| ||||| || | ||||| ||
Sbjct 66082 TAGATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAG 66023
Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261
||||| || || ||||| | |||||||| || | ||| ||||| | | ||| |||
Sbjct 66022 AATGTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCA 65963
Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321
|| || ||||| |||||||| ||||| |||| | || ||| | | || |
Sbjct 65962 GAGAAGAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA---GCTTTGA 65906
Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381
| | ||||| || | ||||| | |||||| | | || || || ||||
Sbjct 65905 GATCCGTTGATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCG 65846
Query 13382 ATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441
|||||| ||| | || || | | || || ||||| || ||||| || | | |
Sbjct 65845 ATTGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGA 65786
Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501
|||||||| || ||||||||||| || || || |||||||| || || || | |||
Sbjct 65785 CTATACATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCT 65726
Query 13502 TCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCA 13561
||||| |||||||| ||||| |||| | || | || ||| ||| || |||||
Sbjct 65725 TCTGAGACCTGAACATCGGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCT 65666
Query 13562 CTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAtt---ttttttCGTTTTCTGACAAC 13618
|| || || || || || | ||| || || || | || ||||| | |
Sbjct 65665 GATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAG 65606
Query 13619 TTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCA 13678
||| ||| || || |||| || | ||| || || || ||||||| || || ||
Sbjct 65605 TTTTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCT 65546
Query 13679 ACAGCCTTCTTATACATCATCCATAT 13704
| || ||||| |||||| ||| ||
Sbjct 65545 TCGGCTTTCTTGTACATCTCCCAGAT 65520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430970639433078
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |