Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1432 197 1e-45 >seq1432 Length=495105 Score = 197 bits (218), Expect = 1e-45 Identities = 568/866 (66%), Gaps = 12/866 (1%) Strand=Plus/Minus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||||||||| ||| ||||| || | |||||| || ||||||||||| ||||| ||| Sbjct 66379 GACATAACAGAAGCTTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCT 66320 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC 12964 | | |||||| |||||| |||| |||||||| || || ||| || |||| Sbjct 66319 TGAAGCGAAATCAATTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACAC 66260 Query 12965 CCTAATTCTAGT-AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACA 13023 || || ||| || || || |||||||||||||| |||||||| |||| ||||||| Sbjct 66259 CC-AAGCGCAGTCAATAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACG 66201 Query 13024 GTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAAC 13083 ||||| || | || ||| | || || | ||| | | | || || ||||| Sbjct 66200 ATTCATACCAACCAAGGCACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGATCTCAAC 66141 Query 13084 TGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAG--GATTTGATAGATGCTTA 13141 || || ||| || | || ||||||| || || | || ||| | || Sbjct 66140 CGCATCACAAACAATCGAT-TTCAAACGTTCT-ACATCAAGCTTAGTTCTAAGAAGACTA 66083 Query 13142 AACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201 | |||| ||| || ||||||||||| | ||||| ||||| || | ||||| || Sbjct 66082 TAGATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAG 66023 Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261 ||||| || || ||||| | |||||||| || | ||| ||||| | | ||| ||| Sbjct 66022 AATGTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCA 65963 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321 || || ||||| |||||||| ||||| |||| | || ||| | | || | Sbjct 65962 GAGAAGAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA---GCTTTGA 65906 Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381 | | ||||| || | ||||| | |||||| | | || || || |||| Sbjct 65905 GATCCGTTGATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCG 65846 Query 13382 ATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441 |||||| ||| | || || | | || || ||||| || ||||| || | | | Sbjct 65845 ATTGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGA 65786 Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501 |||||||| || ||||||||||| || || || |||||||| || || || | ||| Sbjct 65785 CTATACATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCT 65726 Query 13502 TCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCA 13561 ||||| |||||||| ||||| |||| | || | || ||| ||| || ||||| Sbjct 65725 TCTGAGACCTGAACATCGGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCT 65666 Query 13562 CTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAtt---ttttttCGTTTTCTGACAAC 13618 || || || || || || | ||| || || || | || ||||| | | Sbjct 65665 GATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAG 65606 Query 13619 TTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCA 13678 ||| ||| || || |||| || | ||| || || || ||||||| || || || Sbjct 65605 TTTTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCT 65546 Query 13679 ACAGCCTTCTTATACATCATCCATAT 13704 | || ||||| |||||| ||| || Sbjct 65545 TCGGCTTTCTTGTACATCTCCCAGAT 65520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430970639433078