Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2224 123 1e-23 seq2209 114 7e-21 seq894 114 7e-21 seq882 114 7e-21 seq1373 113 2e-20 seq909 113 2e-20 seq1936 109 3e-19 seq1009 109 3e-19 seq1000 107 1e-18 seq1180 105 3e-18 seq1319 102 4e-17 seq1145 102 4e-17 seq874 102 4e-17 seq841 102 4e-17 >seq2224 Length=2289173 Score = 123 bits (136), Expect = 1e-23 Identities = 85/96 (89%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||| |||||||||| ||| |||||||||| | | |||||||| |||||||||||||| Sbjct 490633 AATCAATAAAAAATAAAAAAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTA 490574 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||||||||||||||||||| Sbjct 490573 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 490538 >seq2209 Length=1804222 Score = 114 bits (126), Expect = 7e-21 Identities = 80/92 (87%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 217239 AAAATAAAGATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 217180 Query 11506 TCTRACCAACTGAGCTAATGGGCCGTCGACGA 11537 ||| |||||||||||||||||||| | || || Sbjct 217179 TCTAACCAACTGAGCTAATGGGCCTTTGATGA 217148 >seq894 Length=3336090 Score = 114 bits (126), Expect = 7e-21 Identities = 89/104 (86%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 11427 GGAAATATA-GAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCT 11485 ||||||| | ||| | || |||| || |||||||||| | | |||||||| |||||| Sbjct 2670985 GGAAATAAATGAAAAAGTATAAAAA-AAGTTGGCCCATGCAGGTTTCGAACCTGCGACCT 2670927 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 2670926 TCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 2670883 >seq882 Length=423529 Score = 114 bits (126), Expect = 7e-21 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| |||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 398006 AAAAAGCAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACA 398065 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 398066 CTCTAACCAACTGAGCTAATGGGCC 398090 >seq1373 Length=985691 Score = 113 bits (124), Expect = 2e-20 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 136362 ATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 136421 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||||||||| Sbjct 136422 ACTGAGCTAATGGGCC 136437 >seq909 Length=422033 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| | | ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 44891 AAAAAAAAAAGATAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 44950 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 44951 GACGCTCTAACCAACTGAGCTAATGGGCC 44979 >seq1936 Length=471843 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 211127 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 211186 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 211187 TGAGCTAATGGGCC 211200 >seq1009 Length=3105692 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 300867 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 300926 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 300927 TGAGCTAATGGGCC 300940 >seq1000 Length=2307337 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 2270224 AAATTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 2270165 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 2270164 CAACTGAGCTAATAGGCC 2270147 >seq1180 Length=4302264 Score = 105 bits (116), Expect = 3e-18 Identities = 86/105 (82%), Gaps = 4/105 (4%) Strand=Plus/Plus Query 11425 AGGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACC 11484 || |||| | | ||| |||||||| | ||||| || | ||||||||||| |||| Sbjct 912012 AGAGAAACAAAAAATATATAAAAAA----AGTGGCCTATACAGGGATCGAACCTGTGACC 912067 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 912068 TTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 912112 >seq1319 Length=682241 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 673716 AAAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 673657 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 673656 CAACTGAGCTAATAGGCC 673639 >seq1145 Length=667652 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 403755 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 403696 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 403695 CAACTGAGCTAATAGGCC 403678 >seq874 Length=413965 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 401368 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 401427 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 401428 CAACTGAGCTAATAGGCC 401445 >seq841 Length=540348 Score = 102 bits (112), Expect = 4e-17 Identities = 77/90 (86%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| || ||| |||| |||| || | ||||||||||| ||||||||||||||||||| Sbjct 91677 TAAAAATAAAAGAAAT-GGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCA 91735 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 91736 CGACGCTCTAACCAACTGAGCTAATAGGCC 91765 Score = 102 bits (112), Expect = 4e-17 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||| || | ||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 162131 AAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACC 162072 Query 11513 AACTGAGCTAATGGGCCGTC 11532 |||||||||||| |||| || Sbjct 162071 AACTGAGCTAATAGGCCATC 162052 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261484064477164