Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq892 165 1e-36 seq894 154 2e-33 seq609 152 8e-33 seq996 113 7e-21 seq1223 107 3e-19 seq1132 107 3e-19 >seq892 Length=1410631 Score = 165 bits (182), Expect = 1e-36 Identities = 183/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || || | |||||||| | ||||||| Sbjct 864672 GAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGGAGATTGGCTCGTAGAGGTGGAG 864731 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||||||||||| ||||| || | |||||||| ||| Sbjct 864732 TCAAGCGTATCAGTGGTCTGATCTATGAAGAGACTCGTGGCGTCCTCAAGATCTTTCTCG 864791 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | ||||||| | || ||||||||||||| | |||||||| ||| Sbjct 864792 AGAACGTGATTCGTGATGCTGTTACTTACACCGAGCACGCTAGGAGGAAGACTGTGACCG 864851 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || || || | || | ||||| | | |||| || || || ||| Sbjct 864852 CCATGGATGTTGTGTACGCTCTCAAGAGGCAAGGAAGGACTCTTTACGGATTCGGCGGTT 864911 Query 16698 AATC 16701 |||| Sbjct 864912 AATC 864915 Score = 143 bits (158), Expect = 4e-30 Identities = 178/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| ||||| || || || | |||||||| | ||||||| Sbjct 1000408 GAGACAACATCCAAGGAATCACTAAGCCGGCGATTCGGAGATTGGCTCGTAGAGGTGGAG 1000349 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| ||||||| |||| || | |||||||| ||| Sbjct 1000348 TCAAGCGTATCAGTGGTCTGATCTACGAAGAGACACGTGGCGTCCTCAAGATCTTTCTCG 1000289 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||| ||| | || ||||||||||||| | |||||||| ||| Sbjct 1000288 AGAATGTGATTCGTGACGCTGTTACTTACACCGAGCACGCTAGGAGGAAGACTGTGACCG 1000229 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || || || | || | ||||| | | |||| || || || ||| Sbjct 1000228 CCATGGATGTTGTGTACGCTCTCAAGAGGCAAGGAAGGACTCTTTACGGATTCGGCGGTT 1000169 Query 16698 AATC 16701 |||| Sbjct 1000168 AATC 1000165 >seq894 Length=3336090 Score = 154 bits (170), Expect = 2e-33 Identities = 180/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| ||||| ||||||||||| ||||| |||||||| |||||| | ||||| ||| Sbjct 3229352 GATAACATTCAAGGTATCACCAAGCCTGCTATTCGTCGTCTTGCTCGTAGAGGTGGTGTC 3229411 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| || | || || |||| | | | ||| | |||||||||||| || Sbjct 3229412 AAGCGTATCAGTGGTCTGATTTACGAGGAGACTAGAGGTGTCCTCAAGATCTTCCTCGAG 3229471 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| ||| || | || || |||||||| | | ||||| || || || Sbjct 3229472 AATGTCATCCGTGACGCCGTTACTTACACTGAGCACGCCAGGAGGAAGACGGTGACTGCC 3229531 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | ||||| || ||||| | ||||| |||| | || ||||| || ||||| Sbjct 3229532 ATGGATGTTGTCTACGCTTTGAAGAGGCAAGGACGTACTCTCTACGGTTTCGGCGGTTAA 3229591 Query 16700 TCT 16702 ||| Sbjct 3229592 TCT 3229594 Score = 154 bits (170), Expect = 2e-33 Identities = 180/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| ||||| ||||||||||| ||||| |||||||| |||||| | ||||| ||| Sbjct 3297333 GATAACATTCAAGGTATCACCAAGCCTGCTATTCGTCGTCTTGCTCGTAGAGGTGGTGTC 3297274 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| || | || || |||| | | | ||| | |||||||||||| || Sbjct 3297273 AAGCGTATCAGTGGTCTGATTTACGAGGAGACTAGAGGTGTCCTCAAGATCTTCCTCGAG 3297214 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| ||| || | || || |||||||| | | ||||| || || || Sbjct 3297213 AATGTCATCCGTGACGCCGTTACTTACACTGAGCACGCCAGGAGGAAGACGGTGACTGCC 3297154 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | ||||| || ||||| | ||||| |||| | || ||||| || ||||| Sbjct 3297153 ATGGATGTTGTCTACGCTTTGAAGAGGCAAGGACGTACTCTCTACGGTTTCGGCGGTTAA 3297094 Query 16700 TCT 16702 ||| Sbjct 3297093 TCT 3297091 >seq609 Length=40375 Score = 152 bits (168), Expect = 8e-33 Identities = 180/244 (74%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| ||||| ||||| ||||| || || |||||||| ||| || | ||||| ||| Sbjct 32161 GATAACATTCAAGGTATCACTAAGCCTGCCATTCGTCGTCTTGCTTGTAGAGGTGGTGTC 32102 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| | |||| ||||||| | | | ||| | |||||||||||| || Sbjct 32101 AAGCGTATCAGTGGTCTCATCTACGAAGAGACTAGAGGTGTCCTCAAGATCTTCCTCGAG 32042 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| ||| ||| | || || |||||||| | | ||||| || || || Sbjct 32041 AATGTCATCCGTGACGCTGTTACTTACACTGAGCACGCCAGGAGGAAGACGGTGACTGCC 31982 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | ||||| || ||||| | ||||| |||| | || ||||| || ||||| Sbjct 31981 ATGGATGTTGTCTACGCTTTGAAGAGGCAAGGACGTACTCTCTACGGTTTCGGCGGTTAA 31922 Query 16700 TCTT 16703 |||| Sbjct 31921 TCTT 31918 >seq996 Length=1382858 Score = 113 bits (124), Expect = 7e-21 Identities = 181/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||| ||||| ||||||||||| || ||||| || || || Sbjct 71652 GCCAAGAGACATCGGAAAGTTCTCCGAGACAACATCCAAGGGATTACCAAACCTGCGATT 71593 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||| | | || || || || ||| || ||| ||| |||||||||||| | Sbjct 71592 CGTCGATTGGCTAGAAGAGGAGGCGTGAAACGTATCAGTGGTTTGATCTATGAAGAGACT 71533 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | |||||||| ||| ||| ||| || | ||| || | || || ||| Sbjct 71532 CGGGGCGTTCTCAAGATCTTTCTCGAGAACGTGATTCGTGACGCCGTTACTTACACGGAG 71473 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || || || || || | ||||| |||| || || | || | ||||| Sbjct 71472 CACGCTCGCCGGAAAACAGTTACGGCGATGGACGTCGTTTACGCTCTTAAGAGACAAGGA 71413 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||| || || Sbjct 71412 CGGACTTTGTATGGATTCGG 71393 >seq1223 Length=1822432 Score = 107 bits (118), Expect = 3e-19 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| |||||||| ||||||||||| |||||||| || |||||||| ||||| | || Sbjct 767700 TCTTCGTGATAACATTCAAGGAATCACAAAGCCAGCGATTCGTCGTCTTGCTCGAAGAGG 767759 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || ||| | || ||||||| |||||||||| | | | ||| ||||||||||| Sbjct 767760 AGGTGTGAAGAGAATCAGTGGATTGATCTATGAAGAAACGAGAGGTGTGTTGAAGATCTT 767819 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCA 16614 || ||| || || |||||| | ||||| ||||| Sbjct 767820 TCTAGAGAATGTGATTAGAGATGCTGTTACTTATACAGAGCA 767861 >seq1132 Length=1212730 Score = 107 bits (118), Expect = 3e-19 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| ||||| || || || | |||||||| | ||||| | Sbjct 102975 GAGACAACATCCAAGGAATCACTAAGCCGGCGATTCGGAGATTGGCTCGTAGAGGTGGTG 102916 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| | ||| || |||| || |||| |||| ||| | |||||||| | Sbjct 102915 TCAAGCGTATTAGTGGTCTGATCTACGAGGAGACACGTGGCGTTCTCAAGATCTTTTTGG 102856 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||||||| ||| || | || || ||||||||| | ||||| || || Sbjct 102855 AGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCTCGGAGGAAGACGGTGACTG 102796 Query 16638 CCATGGATATCGTCTATGC 16656 | |||||| | || ||||| Sbjct 102795 CTATGGATGTTGTTTATGC 102777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073152866627