Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq892 165 1e-36
seq894 154 2e-33
seq609 152 8e-33
seq996 113 7e-21
seq1223 107 3e-19
seq1132 107 3e-19
>seq892
Length=1410631
Score = 165 bits (182), Expect = 1e-36
Identities = 183/244 (75%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||||||||||||||||||||| || || || | |||||||| | |||||||
Sbjct 864672 GAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGGAGATTGGCTCGTAGAGGTGGAG 864731
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
|||||||| || ||| || |||||||||||| ||||| || | |||||||| |||
Sbjct 864732 TCAAGCGTATCAGTGGTCTGATCTATGAAGAGACTCGTGGCGTCCTCAAGATCTTTCTCG 864791
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||| || | ||||||| | || ||||||||||||| | |||||||| |||
Sbjct 864792 AGAACGTGATTCGTGATGCTGTTACTTACACCGAGCACGCTAGGAGGAAGACTGTGACCG 864851
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
|||||||| | || || || | || | ||||| | | |||| || || || |||
Sbjct 864852 CCATGGATGTTGTGTACGCTCTCAAGAGGCAAGGAAGGACTCTTTACGGATTCGGCGGTT 864911
Query 16698 AATC 16701
||||
Sbjct 864912 AATC 864915
Score = 143 bits (158), Expect = 4e-30
Identities = 178/244 (73%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||||||||||||||| ||||| || || || | |||||||| | |||||||
Sbjct 1000408 GAGACAACATCCAAGGAATCACTAAGCCGGCGATTCGGAGATTGGCTCGTAGAGGTGGAG 1000349
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
|||||||| || ||| || |||| ||||||| |||| || | |||||||| |||
Sbjct 1000348 TCAAGCGTATCAGTGGTCTGATCTACGAAGAGACACGTGGCGTCCTCAAGATCTTTCTCG 1000289
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| || || | ||| ||| | || ||||||||||||| | |||||||| |||
Sbjct 1000288 AGAATGTGATTCGTGACGCTGTTACTTACACCGAGCACGCTAGGAGGAAGACTGTGACCG 1000229
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
|||||||| | || || || | || | ||||| | | |||| || || || |||
Sbjct 1000228 CCATGGATGTTGTGTACGCTCTCAAGAGGCAAGGAAGGACTCTTTACGGATTCGGCGGTT 1000169
Query 16698 AATC 16701
||||
Sbjct 1000168 AATC 1000165
>seq894
Length=3336090
Score = 154 bits (170), Expect = 2e-33
Identities = 180/243 (74%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|||||||| ||||| ||||||||||| ||||| |||||||| |||||| | ||||| |||
Sbjct 3229352 GATAACATTCAAGGTATCACCAAGCCTGCTATTCGTCGTCTTGCTCGTAGAGGTGGTGTC 3229411
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|||||| || ||| || | || || |||| | | | ||| | |||||||||||| ||
Sbjct 3229412 AAGCGTATCAGTGGTCTGATTTACGAGGAGACTAGAGGTGTCCTCAAGATCTTCCTCGAG 3229471
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| || |||| ||| || | || || |||||||| | | ||||| || || ||
Sbjct 3229472 AATGTCATCCGTGACGCCGTTACTTACACTGAGCACGCCAGGAGGAAGACGGTGACTGCC 3229531
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||||| | ||||| || ||||| | ||||| |||| | || ||||| || |||||
Sbjct 3229532 ATGGATGTTGTCTACGCTTTGAAGAGGCAAGGACGTACTCTCTACGGTTTCGGCGGTTAA 3229591
Query 16700 TCT 16702
|||
Sbjct 3229592 TCT 3229594
Score = 154 bits (170), Expect = 2e-33
Identities = 180/243 (74%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|||||||| ||||| ||||||||||| ||||| |||||||| |||||| | ||||| |||
Sbjct 3297333 GATAACATTCAAGGTATCACCAAGCCTGCTATTCGTCGTCTTGCTCGTAGAGGTGGTGTC 3297274
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|||||| || ||| || | || || |||| | | | ||| | |||||||||||| ||
Sbjct 3297273 AAGCGTATCAGTGGTCTGATTTACGAGGAGACTAGAGGTGTCCTCAAGATCTTCCTCGAG 3297214
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| || |||| ||| || | || || |||||||| | | ||||| || || ||
Sbjct 3297213 AATGTCATCCGTGACGCCGTTACTTACACTGAGCACGCCAGGAGGAAGACGGTGACTGCC 3297154
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||||| | ||||| || ||||| | ||||| |||| | || ||||| || |||||
Sbjct 3297153 ATGGATGTTGTCTACGCTTTGAAGAGGCAAGGACGTACTCTCTACGGTTTCGGCGGTTAA 3297094
Query 16700 TCT 16702
|||
Sbjct 3297093 TCT 3297091
>seq609
Length=40375
Score = 152 bits (168), Expect = 8e-33
Identities = 180/244 (74%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|||||||| ||||| ||||| ||||| || || |||||||| ||| || | ||||| |||
Sbjct 32161 GATAACATTCAAGGTATCACTAAGCCTGCCATTCGTCGTCTTGCTTGTAGAGGTGGTGTC 32102
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|||||| || ||| | |||| ||||||| | | | ||| | |||||||||||| ||
Sbjct 32101 AAGCGTATCAGTGGTCTCATCTACGAAGAGACTAGAGGTGTCCTCAAGATCTTCCTCGAG 32042
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| || |||| ||| ||| | || || |||||||| | | ||||| || || ||
Sbjct 32041 AATGTCATCCGTGACGCTGTTACTTACACTGAGCACGCCAGGAGGAAGACGGTGACTGCC 31982
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||||| | ||||| || ||||| | ||||| |||| | || ||||| || |||||
Sbjct 31981 ATGGATGTTGTCTACGCTTTGAAGAGGCAAGGACGTACTCTCTACGGTTTCGGCGGTTAA 31922
Query 16700 TCTT 16703
||||
Sbjct 31921 TCTT 31918
>seq996
Length=1382858
Score = 113 bits (124), Expect = 7e-21
Identities = 181/260 (70%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||| | ||||| | | ||| ||||| ||||||||||| || ||||| || || ||
Sbjct 71652 GCCAAGAGACATCGGAAAGTTCTCCGAGACAACATCCAAGGGATTACCAAACCTGCGATT 71593
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
||||| ||||| | | || || || || ||| || ||| ||| |||||||||||| |
Sbjct 71592 CGTCGATTGGCTAGAAGAGGAGGCGTGAAACGTATCAGTGGTTTGATCTATGAAGAGACT 71533
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | ||| | |||||||| ||| ||| ||| || | ||| || | || || |||
Sbjct 71532 CGGGGCGTTCTCAAGATCTTTCTCGAGAACGTGATTCGTGACGCCGTTACTTACACGGAG 71473
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||| || || || || || | ||||| |||| || || | || | |||||
Sbjct 71472 CACGCTCGCCGGAAAACAGTTACGGCGATGGACGTCGTTTACGCTCTTAAGAGACAAGGA 71413
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|| | | ||||| || ||
Sbjct 71412 CGGACTTTGTATGGATTCGG 71393
>seq1223
Length=1822432
Score = 107 bits (118), Expect = 3e-19
Identities = 121/162 (75%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
|||||| |||||||| ||||||||||| |||||||| || |||||||| ||||| | ||
Sbjct 767700 TCTTCGTGATAACATTCAAGGAATCACAAAGCCAGCGATTCGTCGTCTTGCTCGAAGAGG 767759
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
|| || ||| | || ||||||| |||||||||| | | | ||| |||||||||||
Sbjct 767760 AGGTGTGAAGAGAATCAGTGGATTGATCTATGAAGAAACGAGAGGTGTGTTGAAGATCTT 767819
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCA 16614
|| ||| || || |||||| | ||||| |||||
Sbjct 767820 TCTAGAGAATGTGATTAGAGATGCTGTTACTTATACAGAGCA 767861
>seq1132
Length=1212730
Score = 107 bits (118), Expect = 3e-19
Identities = 143/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||||||||||||||| ||||| || || || | |||||||| | ||||| |
Sbjct 102975 GAGACAACATCCAAGGAATCACTAAGCCGGCGATTCGGAGATTGGCTCGTAGAGGTGGTG 102916
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
|||||||| | ||| || |||| || |||| |||| ||| | |||||||| |
Sbjct 102915 TCAAGCGTATTAGTGGTCTGATCTACGAGGAGACACGTGGCGTTCTCAAGATCTTTTTGG 102856
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||||||| ||| || | || || ||||||||| | ||||| || ||
Sbjct 102855 AGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCTCGGAGGAAGACGGTGACTG 102796
Query 16638 CCATGGATATCGTCTATGC 16656
| |||||| | || |||||
Sbjct 102795 CTATGGATGTTGTTTATGC 102777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79073152866627
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |