Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_006883.2
Length=252401
Score E
Sequences producing significant alignments: (Bits) Value
seq916 131 3e-25
>seq916
Length=372641
Score = 131 bits (144), Expect = 3e-25
Identities = 248/361 (69%), Gaps = 8/361 (2%)
Strand=Plus/Plus
Query 194583 GAAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTAC 194642
|||||| | ||||| | || ||||| ||||| || ||||| || || |||| ||
Sbjct 166271 GAAACCAGTTTATGTCATCCTCGCTGCAGCTAAAGTCGGTGGGATTCATGCTAACAACAC 166330
Query 194643 CTATCCTGCCGATTTCATCTATGACAATCTGATGATTCAGACAAATGTTATTGATGCTGC 194702
|| || || |||||||| || |||||| || ||||| ||||| || | ||||
Sbjct 166331 ATACCCAGCTGATTTCATTGGTGTCAATCTCCAAATCCAGACCAATGTGATCCACTCTGC 166390
Query 194703 ATATCGTAATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGTT 194762
||| |||| || |||||||| | ||||| |||||||||||||| || || || ||
Sbjct 166391 TTATAAGCATGGTGTGAAGAAACTCCTCTTTCTTGGTTCATCTTGCATTTACCCCAAATT 166450
Query 194763 ---TCCAAAGATACCTATTACAGAGGATCAGTTACTTGCTAGTCCTTTGGAAGAATCTAA 194819
||| | ||| ||| | || | | | ||| || |||| | ||| ||||
Sbjct 166451 CGCTCCTCA---ACCGATTCCTGAATCTGCGCTTCTTACTGGTCCGCTTGAACCGACTAA 166507
Query 194820 -TAGTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCGTCAGC 194878
| || || |||||||| ||||| ||||| || | |||||||||||| || || | |
Sbjct 166508 CGAATG-GTACGCAATTGCCAAGATCGCAGGGATTAAGATGTGTCAAGCTTACCGGCTTC 166566
Query 194879 AGTATGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGATAATT 194938
|| || || |||| || || ||||| || ||||| ||||| | ||||||||||
Sbjct 166567 AGCATCAATGGGATGCCATCTCCGGTATGCCCACGAATCTGTACGGTCAAAATGATAATT 166626
Query 194939 T 194939
|
Sbjct 166627 T 166627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 807532598548840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |