Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq916 131 3e-25 >seq916 Length=372641 Score = 131 bits (144), Expect = 3e-25 Identities = 248/361 (69%), Gaps = 8/361 (2%) Strand=Plus/Plus Query 194583 GAAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTAC 194642 |||||| | ||||| | || ||||| ||||| || ||||| || || |||| || Sbjct 166271 GAAACCAGTTTATGTCATCCTCGCTGCAGCTAAAGTCGGTGGGATTCATGCTAACAACAC 166330 Query 194643 CTATCCTGCCGATTTCATCTATGACAATCTGATGATTCAGACAAATGTTATTGATGCTGC 194702 || || || |||||||| || |||||| || ||||| ||||| || | |||| Sbjct 166331 ATACCCAGCTGATTTCATTGGTGTCAATCTCCAAATCCAGACCAATGTGATCCACTCTGC 166390 Query 194703 ATATCGTAATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGTT 194762 ||| |||| || |||||||| | ||||| |||||||||||||| || || || || Sbjct 166391 TTATAAGCATGGTGTGAAGAAACTCCTCTTTCTTGGTTCATCTTGCATTTACCCCAAATT 166450 Query 194763 ---TCCAAAGATACCTATTACAGAGGATCAGTTACTTGCTAGTCCTTTGGAAGAATCTAA 194819 ||| | ||| ||| | || | | | ||| || |||| | ||| |||| Sbjct 166451 CGCTCCTCA---ACCGATTCCTGAATCTGCGCTTCTTACTGGTCCGCTTGAACCGACTAA 166507 Query 194820 -TAGTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCGTCAGC 194878 | || || |||||||| ||||| ||||| || | |||||||||||| || || | | Sbjct 166508 CGAATG-GTACGCAATTGCCAAGATCGCAGGGATTAAGATGTGTCAAGCTTACCGGCTTC 166566 Query 194879 AGTATGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGATAATT 194938 || || || |||| || || ||||| || ||||| ||||| | |||||||||| Sbjct 166567 AGCATCAATGGGATGCCATCTCCGGTATGCCCACGAATCTGTACGGTCAAAATGATAATT 166626 Query 194939 T 194939 | Sbjct 166627 T 166627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807532598548840