Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 232 8e-56
seq415 172 7e-38
seq1009 105 8e-18
seq778 89.7 6e-13
>seq1432
Length=495105
Score = 232 bits (256), Expect = 8e-56
Identities = 616/922 (67%), Gaps = 33/922 (4%)
Strand=Plus/Minus
Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071
||| || || ||||| || | || || ||||| |||||||| |||| | || ||
Sbjct 66365 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 66306
Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131
|||||| ||||||| ||||| | ||| ||| | || | | || | ||| |
Sbjct 66305 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 66246
Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191
|| ||||| || || || || || || |||||| |||| |||||| || | |
Sbjct 66245 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACGATTCATACCAACCAA 66186
Query 33192 TTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 33249
| ||||| || |||| || ||| ||| || || |||||||| | |
Sbjct 66185 GGCACAAGGAAGCGCGTCGCA--AACAAACTCTCTCTCGATCTCAACCGCATCACAAACA 66128
Query 33250 ATAGATCT--AACGGTTT-CTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACAT 33306
|| ||| | |||| | | | ||| | | | | || || | || | ||||||||
Sbjct 66127 ATCGATTTCAAACGTTCTACATCAAGCT-TAGTTCTAAGAA--GACTATAGATCAAACAA 66071
Query 33307 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 33366
|||||||| ||||| ||||| |||||||| ||| | |||||| || || ||||||||
Sbjct 66070 GCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCA 66011
Query 33367 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCAGAAAAGAAGAT 33425
||||||| || || || || | ||| ||||| ||| | || | | ||||| ||||| ||
Sbjct 66010 GGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGAGAAGAATAT 65952
Query 33426 TCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT--A 33481
||||| || |||||| || | | |||||| | | || || || || |
Sbjct 65951 ACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA----GCTTTGAGATCCGTTGA 65896
Query 33482 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33541
|||| || ||||| || || ||||| | |||||||| || ||||| || || ||
Sbjct 65895 TCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCGAA 65836
Query 33542 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 33601
|||||| | | | || || | ||||| | ||||| |||| | ||||||||||| |
Sbjct 65835 AGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCT 65776
Query 33602 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 33661
| |||||||| || || || || || || ||||||||||| | ||| || | | ||
Sbjct 65775 CAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGACCT 65716
Query 33662 GTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720
| || || | ||| |||||| | | ||| || || |||||||| || ||
Sbjct 65715 GAACATC-GGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGCG 65657
Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGT--GTTAGTTTATTCCA 33776
|| || || | || ||||| || || | |||||| |||| || ||||| | |||
Sbjct 65656 AAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTT-TCCCA 65598
Query 33777 ATC---ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33833
|| |||| |||| ||| | ||| |||||||| | ||||| || || || || ||
Sbjct 65597 GTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGC 65541
Query 33834 CTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGG 33893
|| || ||||| | |||||| | |||||||||||||| ||| |||| || |||
Sbjct 65540 TTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGG 65481
Query 33894 ATTTGGTGCAAGGATGGGTTCC 33915
|||||| ||||| ||||||
Sbjct 65480 TGTTGGTGTTAGGATTGGTTCC 65459
>seq415
Length=609146
Score = 172 bits (190), Expect = 7e-38
Identities = 290/414 (70%), Gaps = 7/414 (2%)
Strand=Plus/Plus
Query 33493 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33552
||||| | || ||||| || ||||| |||||||| |||||| |||||||| | |
Sbjct 100779 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 100838
Query 33553 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612
|||| || ||||||| | ||| ||||||| | ||||||||||| |||||||| |||
Sbjct 100839 CTTTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATCTCCGAATGGATG 100898
Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672
|||||||| || ||||| || ||||||||| | ||||| | | || || || | |
Sbjct 100899 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC-GGA 100957
Query 33673 CA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33731
|| ||||| || | ||| || || |||||||| || || || || || |
Sbjct 100958 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCGGCGAAGAAAGCGAG 101017
Query 33732 TACATGTTTTATAAA---ATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCATTGATAT 33787
|||||||| || || | || |||| | | | | |||| | ||| || | | |
Sbjct 101018 GACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTT-TCCCAGTCGCGGTTGT 101076
Query 33788 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGT 33847
||| |||| |||||||||||| | ||||| |||||||| || || ||||| ||||| |
Sbjct 101077 CTTGTGATAGATCTACTTCTTCAGCGGTCCAGAATGATGCTTCGGCTTTTTTGTACATTT 101136
Query 33848 TCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTG 33901
|||||| | || || |||||||| ||| ||||| | ||| ||||||
Sbjct 101137 CCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGGGGTTGGTG 101190
Score = 105 bits (116), Expect = 8e-18
Identities = 284/428 (66%), Gaps = 10/428 (2%)
Strand=Plus/Plus
Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071
||| || || ||||| |||||||| || || || |||||||| |||| | || |||
Sbjct 100130 TTTCTGATAATCACCAACACGTTTCTCAAAGAAGTTAGTTTTCCCTTGAAGCGAGATAAG 100189
Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131
|||||| ||||||||||||| ||| || || | || | || | || |
Sbjct 100190 TTCCATCCAATCAAACGGATTAGTAGCACCGTACACCTTCCCGTACCCAAGCGCACCCAA 100249
Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT-AA 33190
| |||||||| || || || ||||| |||||| |||| ||||| || | ||
Sbjct 100250 AAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAA 100309
Query 33191 GTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 33248
|| ||||| || |||| | ||| ||| || || ||||| || |
Sbjct 100310 CGCGCAC-GGAAGCGCGTCGCAC--ACAAACTCTCTCTCGATTTCGACCGCGTCGCAAAC 100366
Query 33249 AATAGATCTAACGGTTTCTTCACTCGG--TGGATGCAATAAATGTTTAAACATCAAACAT 33306
|| ||| | ||| ||||||||| | | | | | || || || | | | |||
Sbjct 100367 GATTGATTTCACGCGTTCTTCACTTAGCTTAGTTTTGAGAAGCGTGTAGAGA--AGACAA 100424
Query 33307 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 33366
|||||||||||||| || || ||||||| | || | |||||||||||| || |||||
Sbjct 100425 GCGAAATCGCAGTGTAGTCCTTCGTCTCGAGAGATCAATTCGTTGGAAAATGTTAGTCCA 100484
Query 33367 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATT 33426
||||| || || || || || ||||| || || ||| || ||| || ||||||||
Sbjct 100485 GGCATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATA 100544
Query 33427 CCTTCTAC 33434
||||| ||
Sbjct 100545 CCTTCAAC 100552
>seq1009
Length=3105692
Score = 105 bits (116), Expect = 8e-18
Identities = 157/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430
|||||| || || | || | ||| || | ||| | || | || |||||||| ||||||
Sbjct 1455503 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAACACCCGCAGCATTGGAACAATACC 1455444
Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490
|| ||| ||||||||||| || ||||||||| | ||||| || || || |||
Sbjct 1455443 ATTAGATGCTCCATTGGTACCACGAATGTAGCTTCCAGTTGCACGGATGTTGTGAACTGA 1455384
Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550
| ||| || ||||| ||| ||| || | || || ||| || |||||||| ||
Sbjct 1455383 AACACCAATGCCCCCAGCCGATTTGCTTATAACAGCACACTCTTTCAATGTGTCATATAT 1455324
Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593
||||| ||||||||||| ||||| | ||||| ||||||
Sbjct 1455323 CCCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 1455281
>seq778
Length=452071
Score = 89.7 bits (98), Expect = 6e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430
|||||| || || | || | ||| || | ||| | || | || |||||||| ||||||
Sbjct 423151 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 423092
Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490
|| ||| | ||||| || || || ||||||||| | ||||| |||||| || ||
Sbjct 423091 ATTAGATGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACCGA 423032
Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550
| ||| || || || || ||| || | || ||| ||| | || || || ||
Sbjct 423031 AACACCGATACCTCCGGCAGATTTGCTTATAACAGCACATTCTTTGAGTGTTTCGTAAAT 422972
Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592
||||| ||||||||||| ||||| | |||||| |||||
Sbjct 422971 GCCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCT 422930
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622929765265240
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