Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1780 98.7 1e-15 seq400 86.0 6e-12 seq788 84.2 2e-11 seq530 84.2 2e-11 seq443 84.2 2e-11 seq895 82.4 7e-11 >seq1780 Length=424430 Score = 98.7 bits (108), Expect = 1e-15 Identities = 124/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || ||| ||||| ||||| ||||| || ||||| |||||| Sbjct 97624 GACACCATTGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAA 97565 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || ||||| || | || || ||||| ||||| |||| | ||| || || || || || Sbjct 97564 CAGAGACTAATCTTCGCTGGTAAACAGCTCGAGGATGGTCGAA-CGCTTGCAGATTACAA 97506 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| ||||||||||| ||| ||||||| || || | || ||||| || Sbjct 97505 CATCCAAAAAGAATCAACTCTCCATCTCGTGCTTCGTCTGAGAGGTGG 97458 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 |||||| |||||||||||||| || || || ||||| |||||||| | | ||||| Sbjct 97372 AAGATTCAGGACAAAGAAGGGATCCCACCAGACCAACAGAGACTCATCTTTGCAGGCAAG 97313 Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972 ||||||||||||| | | | | || || ||||| || || || || || ||||| Sbjct 97312 CAACTCGAAGATGGTCGGACTCTTGCTGATTACAACATCCAGAAGGAGTCAACCCTCCAT 97253 Query 26973 CTGGTCCTGAGACT 26986 || || |||||||| Sbjct 97252 CTCGTGCTGAGACT 97239 >seq400 Length=13612 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| |||||| | ||||| || | ||||| |||| | || Sbjct 2273 ATGCAAATCTTTGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 2214 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||||||| ||||| ||||| || ||||| || || Sbjct 2213 GACACCATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGACCAG 2154 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | || | || ||| ||||| || ||||||| | | | | ||| || || Sbjct 2153 CAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACAAT 2094 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || |||||||| || |||| |||| || Sbjct 2093 ATCCAGAAAGAATCAACCCTCCACTTGGTTCT 2062 >seq788 Length=1574065 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || ||| | || ||||| | |||||| |||| | ||| Sbjct 107569 ATGCAGATCTTTGTTAAGACACTCACCGGAAAGACTATCACCCTCGAGGTGGAAAGCTCT 107628 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||||| ||||| ||||| || ||||| ||||| Sbjct 107629 GACACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 107688 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || || |||| || ||| ||||| || ||||||| | |||| || || || || Sbjct 107689 CARAGGCTTATTTTCGCCGGAAAACAGCTAGAAGATGGCCG-CACGTTGGCTGATTACAA 107747 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 || || || ||||| || |||| |||| || || || Sbjct 107748 TATCCAGAAGGAATCCACCCTCCACTTGGTTCTCAGGCT 107786 >seq530 Length=553347 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || ||||| || ||||| | || || | ||| | || Sbjct 260214 ATGCAGATTTTTGTCAAGACATTGACAGGAAAGACCATTACTTTGGAAGTGGAGAGCTCT 260273 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| |||||| |||||||| || || ||||| || || Sbjct 260274 GACACCATCGACAATGTCAAAGCCAAGATTCAAGACAAAGAGGGTATTCCTCCGGACCAG 260333 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || | || | || ||| || ||||| ||||||| || ||| | || || || || Sbjct 260334 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGATGGCAG-AACTTTGGCTGATTACAA 260392 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||| || || || ||| | || ||||| || | || | ||||| Sbjct 260393 CATTCAGAAGGAGTCCACTCTTCACTTGGTCTTGCGTCTCCGTGGAGG 260440 >seq443 Length=3098630 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 |||||||| || || || || ||||||||||| || |||| | || || ||| | ||| Sbjct 1849461 GACAAAGAGGGTATTCCACCTGATCAACAAAGGCTGATTTTTGCTGGTAAGCAATTGGAA 1849520 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| | | | | ||| || ||||| || ||||| |||||| | ||||| ||| || Sbjct 1849521 GATGGCCGGACCTTAGCCGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTTG 1849580 Query 26982 AGACTTAGAGGAGGAA 26997 || || ||||| |||| Sbjct 1849581 AGGCTCAGAGGTGGAA 1849596 >seq895 Length=2238827 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | || ||| | || | ||||| Sbjct 1033620 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAATCG 1033561 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||| |||||||| | || ||| ||||| ||||| ||||| || || || || Sbjct 1033560 TCCGATACCATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGAC 1033501 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || | |||| || ||| ||||| || ||||| | | | | || |||||| Sbjct 1033500 CAGCAGCGATTGATTTTCGCCGGGAAACAGCTGGAAGACGGCCGTACCCTCGCCGACTAC 1033441 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || || | ||||||||||| Sbjct 1033440 AACATCCAGAAGGAGTCGACGCTTCATCTGGTCCT 1033406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478649003436080