Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq1780 98.7 1e-15
seq400 86.0 6e-12
seq788 84.2 2e-11
seq530 84.2 2e-11
seq443 84.2 2e-11
seq895 82.4 7e-11
>seq1780
Length=424430
Score = 98.7 bits (108), Expect = 1e-15
Identities = 124/168 (74%), Gaps = 2/168 (1%)
Strand=Plus/Minus
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| || | || ||| ||||| ||||| ||||| || ||||| ||||||
Sbjct 97624 GACACCATTGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAA 97565
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947
|| ||||| || | || || ||||| ||||| |||| | ||| || || || || ||
Sbjct 97564 CAGAGACTAATCTTCGCTGGTAAACAGCTCGAGGATGGTCGAA-CGCTTGCAGATTACAA 97506
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
||| ||||||||||| ||| ||||||| || || | || ||||| ||
Sbjct 97505 CATCCAAAAAGAATCAACTCTCCATCTCGTGCTTCGTCTGAGAGGTGG 97458
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912
|||||| |||||||||||||| || || || ||||| |||||||| | | |||||
Sbjct 97372 AAGATTCAGGACAAAGAAGGGATCCCACCAGACCAACAGAGACTCATCTTTGCAGGCAAG 97313
Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972
||||||||||||| | | | | || || ||||| || || || || || |||||
Sbjct 97312 CAACTCGAAGATGGTCGGACTCTTGCTGATTACAACATCCAGAAGGAGTCAACCCTCCAT 97253
Query 26973 CTGGTCCTGAGACT 26986
|| || ||||||||
Sbjct 97252 CTCGTGCTGAGACT 97239
>seq400
Length=13612
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | ||||| |||||| | ||||| || | ||||| |||| | ||
Sbjct 2273 ATGCAAATCTTTGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 2214
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | || || ||||||| ||||| ||||| || ||||| || ||
Sbjct 2213 GACACCATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGACCAG 2154
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| ||| | || | || ||| ||||| || ||||||| | | | | ||| || ||
Sbjct 2153 CAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACAAT 2094
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|| || |||||||| || |||| |||| ||
Sbjct 2093 ATCCAGAAAGAATCAACCCTCCACTTGGTTCT 2062
>seq788
Length=1574065
Score = 84.2 bits (92), Expect = 2e-11
Identities = 151/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| || ||| | || ||||| | |||||| |||| | |||
Sbjct 107569 ATGCAGATCTTTGTTAAGACACTCACCGGAAAGACTATCACCCTCGAGGTGGAAAGCTCT 107628
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | || || ||||| ||||| ||||| || ||||| |||||
Sbjct 107629 GACACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 107688
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947
|| || || |||| || ||| ||||| || ||||||| | |||| || || || ||
Sbjct 107689 CARAGGCTTATTTTCGCCGGAAAACAGCTAGAAGATGGCCG-CACGTTGGCTGATTACAA 107747
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986
|| || || ||||| || |||| |||| || || ||
Sbjct 107748 TATCCAGAAGGAATCCACCCTCCACTTGGTTCTCAGGCT 107786
>seq530
Length=553347
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| || ||||| || ||||| | || || | ||| | ||
Sbjct 260214 ATGCAGATTTTTGTCAAGACATTGACAGGAAAGACCATTACTTTGGAAGTGGAGAGCTCT 260273
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | |||||| |||||| |||||||| || || ||||| || ||
Sbjct 260274 GACACCATCGACAATGTCAAAGCCAAGATTCAAGACAAAGAGGGTATTCCTCCGGACCAG 260333
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947
|| || | || | || ||| || ||||| ||||||| || ||| | || || || ||
Sbjct 260334 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGATGGCAG-AACTTTGGCTGATTACAA 260392
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|||||| || || || ||| | || ||||| || | || | |||||
Sbjct 260393 CATTCAGAAGGAGTCCACTCTTCACTTGGTCTTGCGTCTCCGTGGAGG 260440
>seq443
Length=3098630
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921
|||||||| || || || || ||||||||||| || |||| | || || ||| | |||
Sbjct 1849461 GACAAAGAGGGTATTCCACCTGATCAACAAAGGCTGATTTTTGCTGGTAAGCAATTGGAA 1849520
Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981
|||| | | | | ||| || ||||| || ||||| |||||| | ||||| ||| ||
Sbjct 1849521 GATGGCCGGACCTTAGCCGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTTG 1849580
Query 26982 AGACTTAGAGGAGGAA 26997
|| || ||||| ||||
Sbjct 1849581 AGGCTCAGAGGTGGAA 1849596
>seq895
Length=2238827
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|| ||||| | || || ||||| |||| || || | || ||| | || | |||||
Sbjct 1033620 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAATCG 1033561
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
||| |||||||| | || ||| ||||| ||||| ||||| || || || ||
Sbjct 1033560 TCCGATACCATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGAC 1033501
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
|| || || | |||| || ||| ||||| || ||||| | | | | || ||||||
Sbjct 1033500 CAGCAGCGATTGATTTTCGCCGGGAAACAGCTGGAAGACGGCCGTACCCTCGCCGACTAC 1033441
Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||||| || || || || || | |||||||||||
Sbjct 1033440 AACATCCAGAAGGAGTCGACGCTTCATCTGGTCCT 1033406
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478649003436080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |