Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 120 8e-22
seq1180 96.9 9e-15
seq716 96.9 9e-15
>seq1432
Length=495105
Score = 120 bits (132), Expect = 8e-22
Identities = 347/523 (66%), Gaps = 21/523 (4%)
Strand=Plus/Plus
Query 22437 GAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCA----TTCGCGGAAC 22492
||| || ||||| ||||| |||||||||| ||| || | ||| ||||| ||
Sbjct 65867 GAAGAAAGCAGAATGGGCAATGAAATGGATCAACG--GATC--TCAAAGCTTCGCTGAGA 65922
Query 22493 GTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATTTTGTGCAATC 22551
| | | || |||||| |||||||| || ||||| ||||| ||| |||||| | ||
Sbjct 65923 GAATCGTAGCTTTTGCTTGCGTTGAAGGTATATTCTTCTCTGGTAGC-TTTTGTTCGATA 65981
Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611
|| ||| | || ||||| | | ||||| || || || || || || || || |||
Sbjct 65982 TTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTCACATTCTCTAACGAATTGATTTCG 66041
Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCAT 22671
|||| || |||||||| ||||| || ||| || | ||| | || || | |
Sbjct 66042 AGAGACGAAGGTCTTCACTGTGATTTCGCTTGTTTGATCTATAGTCTTCTTAGAACT--- 66098
Query 22672 AAACTTCCATATGAAAC---TGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGT 22728
|| ||| || | ||| || | | ||| | || |||| ||||| | || |
Sbjct 66099 AAGCTTG-ATGTAGAACGTTTGAAATCGAT--TGTTTGTGATGCGGTTGAGATCGAGAGA 66155
Query 22729 CTATTTATTTGCGAGGCGTTACCAGTAAGTCTCA-TTGGTATCAATGCCGAATCAATGAG 22787
||| ||||||| ||| | || | | || ||||||| ||| || | |||||
Sbjct 66156 GAGTTTGTTTGCGACGCGCTTCCT-TGTGCCTTGGTTGGTATGAATCGTGATTTGATGAG 66214
Query 22788 TACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTA 22847
| || ||| | |||||||| ||| | |||| | | | || || | || ||| ||
Sbjct 66215 TCAGTACATTGAGTTTGTTGCTGATAGGTTATTGACTGCGCTTGGGTGTGGTAAGGTGTA 66274
Query 22848 TAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTT 22907
| || |||||| ||||| ||||||||| | ||||| ||| |||| || || || ||
Sbjct 66275 TGGTGTGAGTAATCCTTTTGATTGGATGGAATTGATTTCGCTTCAAGGTAAAACTAACTT 66334
Query 22908 CTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950
|| || || ||||||||||| || || ||||| |||||||
Sbjct 66335 TTTTGAGAAGAGAGTTGGTGAGTATCAGAAAGCTTCTGTTATG 66377
>seq1180
Length=4302264
Score = 96.9 bits (106), Expect = 9e-15
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730
||||||||||| ||||| || | | | ||| ||||||||||| || || || ||
Sbjct 2204306 ATGGCACTTCCTCCATGCCA-CATGTTTGCACAGTTTTATGTTGCAGATGGAGAACTGTC 2204364
Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790
||| |||||||||||||| || || ||||| ||||| || || || ||||| ||||||
Sbjct 2204365 ATGTCAAATGTATCAGCGTTCAGCCGATATGGGTCTCGGAGTACCATTTAACATTGCATC 2204424
Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCA 111820
||| | || ||||| ||| | |||||||
Sbjct 2204425 ATACTCCCTTCTTACATGCATTCTCGCTCA 2204454
>seq716
Length=321914
Score = 96.9 bits (106), Expect = 9e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761
||||| ||||| || ||| || ||||| |||||||||||||| || || |||||
Sbjct 17832 CAGTTCTATGTGGCAGAAGGGGAACTCTCATGTCAAATGTATCAGCGTTCAGCGGATATG 17773
Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821
|| |||||||| || ||||| ||||| ||| | || ||||||||| | | |||||
Sbjct 17772 GGCCTTGGTGTGCCATTTAACATTGCTTCCTACTCTCTTCTTACTTGCATGCTGGCTCAC 17713
Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACA 111881
| |||| || ||||| || || || ||||| || ||||| ||||| |||| |
Sbjct 17712 GTGTGTGATCTTGTTCCTGGTGATTTTATCCATGTTATTGGGGATGCTCATGTGTACAAA 17653
Query 111882 A 111882
|
Sbjct 17652 A 17652
Score = 95.1 bits (104), Expect = 3e-14
Identities = 115/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 111726 CTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATT 111785
|| ||||| |||||||||||||| || || ||||| || |||||||| || | ||| |||
Sbjct 11111 CTCTCATGTCAAATGTATCAGCGTTCAGCGGATATGGGCCTTGGTGTGCCATATAACATT 11052
Query 111786 GCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAA 111845
|| ||| | || ||||||||| | || ||||| | |||| || |||||
Sbjct 11051 GCTTCCTACTCTCTTCTTACTTGCATGATGGCTCACGTGTGTGATCTTGTCCCTGGTGAC 10992
Query 111846 TTCATTCACGTTATCGGAGATGCGCATGTTTACACAA 111882
|| || || ||||| || ||||| ||||| |||| ||
Sbjct 10991 TTTATCCATGTTATTGGGGATGCTCATGTGTACAAAA 10955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303316210450898
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |