Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1432 120 8e-22 seq1180 96.9 9e-15 seq716 96.9 9e-15 >seq1432 Length=495105 Score = 120 bits (132), Expect = 8e-22 Identities = 347/523 (66%), Gaps = 21/523 (4%) Strand=Plus/Plus Query 22437 GAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCA----TTCGCGGAAC 22492 ||| || ||||| ||||| |||||||||| ||| || | ||| ||||| || Sbjct 65867 GAAGAAAGCAGAATGGGCAATGAAATGGATCAACG--GATC--TCAAAGCTTCGCTGAGA 65922 Query 22493 GTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATTTTGTGCAATC 22551 | | | || |||||| |||||||| || ||||| ||||| ||| |||||| | || Sbjct 65923 GAATCGTAGCTTTTGCTTGCGTTGAAGGTATATTCTTCTCTGGTAGC-TTTTGTTCGATA 65981 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||| | || ||||| | | ||||| || || || || || || || || ||| Sbjct 65982 TTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTCACATTCTCTAACGAATTGATTTCG 66041 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCAT 22671 |||| || |||||||| ||||| || ||| || | ||| | || || | | Sbjct 66042 AGAGACGAAGGTCTTCACTGTGATTTCGCTTGTTTGATCTATAGTCTTCTTAGAACT--- 66098 Query 22672 AAACTTCCATATGAAAC---TGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGT 22728 || ||| || | ||| || | | ||| | || |||| ||||| | || | Sbjct 66099 AAGCTTG-ATGTAGAACGTTTGAAATCGAT--TGTTTGTGATGCGGTTGAGATCGAGAGA 66155 Query 22729 CTATTTATTTGCGAGGCGTTACCAGTAAGTCTCA-TTGGTATCAATGCCGAATCAATGAG 22787 ||| ||||||| ||| | || | | || ||||||| ||| || | ||||| Sbjct 66156 GAGTTTGTTTGCGACGCGCTTCCT-TGTGCCTTGGTTGGTATGAATCGTGATTTGATGAG 66214 Query 22788 TACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTA 22847 | || ||| | |||||||| ||| | |||| | | | || || | || ||| || Sbjct 66215 TCAGTACATTGAGTTTGTTGCTGATAGGTTATTGACTGCGCTTGGGTGTGGTAAGGTGTA 66274 Query 22848 TAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTT 22907 | || |||||| ||||| ||||||||| | ||||| ||| |||| || || || || Sbjct 66275 TGGTGTGAGTAATCCTTTTGATTGGATGGAATTGATTTCGCTTCAAGGTAAAACTAACTT 66334 Query 22908 CTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 || || || ||||||||||| || || ||||| ||||||| Sbjct 66335 TTTTGAGAAGAGAGTTGGTGAGTATCAGAAAGCTTCTGTTATG 66377 >seq1180 Length=4302264 Score = 96.9 bits (106), Expect = 9e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| ||||| || | | | ||| ||||||||||| || || || || Sbjct 2204306 ATGGCACTTCCTCCATGCCA-CATGTTTGCACAGTTTTATGTTGCAGATGGAGAACTGTC 2204364 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||||||||| || || ||||| ||||| || || || ||||| |||||| Sbjct 2204365 ATGTCAAATGTATCAGCGTTCAGCCGATATGGGTCTCGGAGTACCATTTAACATTGCATC 2204424 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCA 111820 ||| | || ||||| ||| | ||||||| Sbjct 2204425 ATACTCCCTTCTTACATGCATTCTCGCTCA 2204454 >seq716 Length=321914 Score = 96.9 bits (106), Expect = 9e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| ||||| || ||| || ||||| |||||||||||||| || || ||||| Sbjct 17832 CAGTTCTATGTGGCAGAAGGGGAACTCTCATGTCAAATGTATCAGCGTTCAGCGGATATG 17773 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || |||||||| || ||||| ||||| ||| | || ||||||||| | | ||||| Sbjct 17772 GGCCTTGGTGTGCCATTTAACATTGCTTCCTACTCTCTTCTTACTTGCATGCTGGCTCAC 17713 Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACA 111881 | |||| || ||||| || || || ||||| || ||||| ||||| |||| | Sbjct 17712 GTGTGTGATCTTGTTCCTGGTGATTTTATCCATGTTATTGGGGATGCTCATGTGTACAAA 17653 Query 111882 A 111882 | Sbjct 17652 A 17652 Score = 95.1 bits (104), Expect = 3e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 111726 CTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATT 111785 || ||||| |||||||||||||| || || ||||| || |||||||| || | ||| ||| Sbjct 11111 CTCTCATGTCAAATGTATCAGCGTTCAGCGGATATGGGCCTTGGTGTGCCATATAACATT 11052 Query 111786 GCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAA 111845 || ||| | || ||||||||| | || ||||| | |||| || ||||| Sbjct 11051 GCTTCCTACTCTCTTCTTACTTGCATGATGGCTCACGTGTGTGATCTTGTCCCTGGTGAC 10992 Query 111846 TTCATTCACGTTATCGGAGATGCGCATGTTTACACAA 111882 || || || ||||| || ||||| ||||| |||| || Sbjct 10991 TTTATCCATGTTATTGGGGATGCTCATGTGTACAAAA 10955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303316210450898